Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_N07
         (847 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29870.1 68417.m04251 expressed protein predicted protein, Ar...   118   6e-27
At2g19340.2 68415.m06035 membrane protein, putative contains 3 t...   112   3e-25
At2g19340.1 68415.m06034 membrane protein, putative contains 3 t...    99   4e-21
At3g07520.1 68416.m00896 glutamate receptor family protein (GLR1...    29   5.1  

>At4g29870.1 68417.m04251 expressed protein predicted protein,
           Arabidopsis thaliana, PIR2:T01282
          Length = 172

 Score =  118 bits (283), Expect = 6e-27
 Identities = 60/143 (41%), Positives = 86/143 (60%), Gaps = 1/143 (0%)
 Frame = +2

Query: 122 IPFTVLEIPNIKIKKPTWLQAPSAMTTFSLVLLSYFLVTGGIIYDVIVEPPSVGSTTDE- 298
           IPF+ L  P +++K P++   PS MT FSL+LL+YFLV  G +YDVIVEPP +GST D  
Sbjct: 31  IPFSFLRPPRLRLKLPSFT-LPSPMTVFSLILLTYFLVVSGFVYDVIVEPPGIGSTQDPI 89

Query: 299 HGHSRPVAFMPNRVNGQYIMEGLAXXXXXXXXXXXXIILDRTHNPTTPKLNRILLISVAF 478
            G  RPV FM  RVNGQYI+EGL+            I+LD   +    K  +    +   
Sbjct: 90  TGSVRPVVFMSGRVNGQYIIEGLSSGFMFVLGGIGIIMLDLALDKNRAKSVKASYATAGV 149

Query: 479 LCILVSFFTTWIFMRMXLPGYLQ 547
             I++++  + +F+R+ +PGYL+
Sbjct: 150 SSIVIAYVMSMLFIRIKIPGYLR 172


>At2g19340.2 68415.m06035 membrane protein, putative contains 3
           transmembrane domains;
          Length = 173

 Score =  112 bits (269), Expect = 3e-25
 Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 1/142 (0%)
 Frame = +2

Query: 122 IPFTVLEIPNIKIKKPTWLQAPSAMTTFSLVLLSYFLVTGGIIYDVIVEPPSVGSTTD-E 298
           +PF+ L  P +++K P++   PS MT ++L+LL+YFLV  G +YDVIVEPP +GST D  
Sbjct: 32  VPFSFLRPPRLRLKIPSFT-LPSPMTVYALILLTYFLVVSGFVYDVIVEPPGIGSTQDPT 90

Query: 299 HGHSRPVAFMPNRVNGQYIMEGLAXXXXXXXXXXXXIILDRTHNPTTPKLNRILLISVAF 478
            G  RPV FM  RVNGQYI+EGL+            ++LD   +    K  +        
Sbjct: 91  TGTIRPVVFMSGRVNGQYIIEGLSSGFMFVLGGIGIVMLDLALDKNKAKSVKASYAVAGV 150

Query: 479 LCILVSFFTTWIFMRMXLPGYL 544
             I++++  + +F+R+ +PGYL
Sbjct: 151 SSIVIAYVMSMLFIRIKIPGYL 172


>At2g19340.1 68415.m06034 membrane protein, putative contains 3
           transmembrane domains;
          Length = 200

 Score = 98.7 bits (235), Expect = 4e-21
 Identities = 48/100 (48%), Positives = 65/100 (65%), Gaps = 1/100 (1%)
 Frame = +2

Query: 122 IPFTVLEIPNIKIKKPTWLQAPSAMTTFSLVLLSYFLVTGGIIYDVIVEPPSVGSTTD-E 298
           +PF+ L  P +++K P++   PS MT ++L+LL+YFLV  G +YDVIVEPP +GST D  
Sbjct: 32  VPFSFLRPPRLRLKIPSFT-LPSPMTVYALILLTYFLVVSGFVYDVIVEPPGIGSTQDPT 90

Query: 299 HGHSRPVAFMPNRVNGQYIMEGLAXXXXXXXXXXXXIILD 418
            G  RPV FM  RVNGQYI+EGL+            ++LD
Sbjct: 91  TGTIRPVVFMSGRVNGQYIIEGLSSGFMFVLGGIGIVMLD 130


>At3g07520.1 68416.m00896 glutamate receptor family protein (GLR1.4)
           plant glutamate receptor family, PMID:11379626
          Length = 861

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 116 FAIPFTVLEIPNIKIK-KPTWLQAPSAMTTFSLVLLSYFLVTGGIIY 253
           F +PFT + +  +  K K  W+       +  L + S+F++TG I++
Sbjct: 541 FTLPFTDMGLAVVTAKDKSMWIIFKPLTLSLWLTIASFFILTGAIVW 587


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,036,571
Number of Sequences: 28952
Number of extensions: 289454
Number of successful extensions: 603
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 590
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1960634400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)