Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_N03
         (871 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    26   0.44 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    24   1.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.8  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   4.1  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           21   9.5  

>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = +2

Query: 203 GARVVPGAAREPRHRPAH 256
           G R  PG AR  RH PAH
Sbjct: 327 GGRRGPGPARSRRHLPAH 344


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 301 CGISRPTTWRPCNTGTSDPRSWWEVTARCTRAPAGCTSAR 420
           C   +PT WR C+  T + + +    +   R  +G T+AR
Sbjct: 878 CENGKPTCWRECDKATCE-KLFRMKKSSALRPASGGTTAR 916


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
 Frame = +2

Query: 23   LGNPLRFRYARVLDVLARA--APRHGPPPLGSCTRARSQLASHRNSSRLRRRQ*KAMGRF 196
            +G PL  +   + D   R   A  +GP   G  TRA   LA +    R+++R        
Sbjct: 2561 MGMPLYGQSFSLADAADRGLNAKSYGPGEAGEFTRAGGFLAYYEICERVKKRGWTVTR-- 2618

Query: 197  DPGARVVPGA 226
            DP  R+ P A
Sbjct: 2619 DPQGRIGPYA 2628


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/43 (23%), Positives = 21/43 (48%)
 Frame = -1

Query: 193  PSHCFLLTTSQSAAISVRSELRASASTTAEWRRAMSRSGACQH 65
            P HC        A I+V++ + ++ S  A W+  +  +G  ++
Sbjct: 1191 PIHCQTEQDVPEAPIAVKALVMSTDSILASWKPPVEPNGIVEY 1233


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +3

Query: 294 ELVRNIQTNHMEALQYWD 347
           EL +  +TN M+ +Q+W+
Sbjct: 230 ELPQQHKTNVMDVMQWWE 247


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,056
Number of Sequences: 336
Number of extensions: 2903
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23996456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)