Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_N01
         (837 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)                104   1e-22
SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)                    31   1.2  
SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)                 30   2.7  
SB_16159| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_49185| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.7  
SB_25676| Best HMM Match : TSP_1 (HMM E-Value=0.0055)                  29   4.7  
SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)                    29   4.7  
SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)                   29   6.2  

>SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)
          Length = 203

 Score =  104 bits (249), Expect = 1e-22
 Identities = 60/141 (42%), Positives = 85/141 (60%)
 Frame = +2

Query: 86  PENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTE 265
           P++FRA K LIAA+YSGT ++V P F FG+ N + +FLKKFP GKVPAFE+         
Sbjct: 10  PDSFRAQKILIAAEYSGTKIEV-PAFTFGKDNHTAEFLKKFPLGKVPAFETK-------- 60

Query: 266 SNAIAYYVANESLRGGDLATQARVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERA 445
                   AN   R   L T      + +++D ELLPA+  WVFP  G+MQ++KQ+ ++A
Sbjct: 61  -------TANACTRAMPLLTT-----YVNFADQELLPAAATWVFPTYGMMQYHKQSTDKA 108

Query: 446 KSDLLAALXVLDGHLLTRTFL 508
             D+   + +L+  LL +TFL
Sbjct: 109 MEDVKKYMTMLNDVLLMKTFL 129


>SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)
          Length = 505

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/74 (25%), Positives = 31/74 (41%)
 Frame = +2

Query: 83  IPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLT 262
           I  N   +K +   Q   +  K+ P  V GE N   + +KK     +P      GK +  
Sbjct: 102 IAVNIGKFKMVWIDQIDESTKKLKPKMVAGEDNGFVNAIKKVSLEDIPEGNGPSGKAIRE 161

Query: 263 ESNAIAYYVANESL 304
           + + I   + N+SL
Sbjct: 162 KRSIIVNDIENDSL 175


>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
          Length = 260

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 4/104 (3%)
 Frame = +2

Query: 209 PAGKVPAFESADGKVLLTESNAIAYYVA--NESLRGGDLATQARVWQWASWSDSELLPAS 382
           P   +P  E+ +G      SN I  Y+A  ++ L G DL  + +V QW   +  +   A 
Sbjct: 45  PFNTLPLLETKEGTFF--SSNTIIRYLAASSDKLYGSDLFQRGQVDQWLDITTCDFEAAV 102

Query: 383 CAWVFPYLGIMQFNKQNVERAK--SDLLAALXVLDGHLLTRTFL 508
            A      G      ++VE AK  +D+   L  ++ HL  R FL
Sbjct: 103 AAVAIAKEG------RDVEGAKIVADINKFLGFVEKHLAGRKFL 140


>SB_16159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 314 DLATQARVWQWASWSDSELLPASCA 388
           DL T A+V+ WA W   ++   SCA
Sbjct: 78  DLTTTAQVYSWAMWEPWQMRNLSCA 102


>SB_49185| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 371

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
 Frame = +2

Query: 566 FPARAXPE-RPFVXDKRSALVPDRRPPPASVGRRPAXSRSVRXLLHTTPXXYQXSXGCPN 742
           F     PE RPF  +     VP   P P   G RP  + S +  L T+P   +   G   
Sbjct: 217 FAREVPPEPRPFAQE-----VPQEAPAPRRYGTRPTSAASTQPSLGTSPRYMREPQGTRE 271

Query: 743 P 745
           P
Sbjct: 272 P 272


>SB_25676| Best HMM Match : TSP_1 (HMM E-Value=0.0055)
          Length = 141

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 314 DLATQARVWQWASWSDSELLPASCA 388
           DL T A+V+ WA W   ++   SCA
Sbjct: 78  DLTTTAQVYSWAMWEPWQMRNLSCA 102


>SB_16955| Best HMM Match : SLAP (HMM E-Value=0.048)
          Length = 1952

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
 Frame = +2

Query: 566  FPARAXPE-RPFVXDKRSALVPDRRPPPASVGRRPAXSRSVRXLLHTTPXXYQXSXGCPN 742
            F     PE RPF  +     VP   P P   G RP  + S +  L T+P   +   G   
Sbjct: 1798 FAREVPPEPRPFAQE-----VPQEAPAPRRYGTRPTSAASTQPSLGTSPRYMREPQGTRE 1852

Query: 743  P 745
            P
Sbjct: 1853 P 1853


>SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)
          Length = 364

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -2

Query: 221 LFRQETSSRSLRTCWSRQIRNSVLLSHQSRNIVRRSTLYK 102
           +FR +  + +     S ++ N V +SHQSR IV   T+ K
Sbjct: 102 VFRSKQQAPNKAVGRSDEVTNEVAVSHQSRRIVESETVRK 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,669,807
Number of Sequences: 59808
Number of extensions: 567836
Number of successful extensions: 1540
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1537
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2359470773
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)