Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP03_F_L19
         (849 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02090.2 68416.m00175 mitochondrial processing peptidase beta...   134   5e-32
At3g02090.1 68416.m00174 mitochondrial processing peptidase beta...   134   5e-32
At3g16480.1 68416.m02103 mitochondrial processing peptidase alph...    40   0.002
At1g51980.1 68414.m05863 mitochondrial processing peptidase alph...    40   0.002
At1g33250.1 68414.m04110 fringe-related protein + weak similarit...    28   6.8  
At1g02020.2 68414.m00122 nitroreductase family protein contains ...    28   6.8  
At1g02020.1 68414.m00121 nitroreductase family protein contains ...    28   6.8  
At5g63900.1 68418.m08023 PHD finger family protein contains Pfam...    28   9.0  

>At3g02090.2 68416.m00175 mitochondrial processing peptidase beta
           subunit, putative similar to mitochondrial processing
           peptidase beta subunit, mitochondrial precursor,
           Beta-MPP [Human] SWISS-PROT:O75439
          Length = 535

 Score =  134 bits (325), Expect = 5e-32
 Identities = 60/130 (46%), Positives = 90/130 (69%)
 Frame = +1

Query: 49  DDSMPLAHVAIAVEGAGWTDADNIPLMVANTLIGAWDRSQGGGSNNASYLARAASVGNLC 228
           DD +PLA  A+A EGA WTD D++ LMV  T++G+W+++ GGG +  S L +  ++  + 
Sbjct: 330 DDDLPLAQFAVAFEGASWTDPDSVALMVMQTMLGSWNKNVGGGKHVGSDLTQRVAINEIA 389

Query: 229 HSFQSFNTCYKDTGLWGIYFVAESLQLDDMLYNIXKEWMKLCTSVTEGEVERAKNLLKTN 408
            S  +FNT YKDTGL+G+Y VA++  LDD+ Y I  E  KL   V++ +V RA+N LK++
Sbjct: 390 ESIMAFNTNYKDTGLFGVYAVAKADCLDDLSYAIMYEVTKLAYRVSDADVTRARNQLKSS 449

Query: 409 MLLQLDGTTP 438
           +LL +DGT+P
Sbjct: 450 LLLHMDGTSP 459



 Score = 54.4 bits (125), Expect = 9e-08
 Identities = 24/49 (48%), Positives = 33/49 (67%)
 Frame = +2

Query: 440 VCEDIGRQMLCYNRRIPIHELDARIESVTVXNVRDVCYKYLFDPLSSCS 586
           + EDIGRQ+L Y RRIP  EL ARI++V    V+ V  KY++D +  C+
Sbjct: 460 IAEDIGRQLLTYGRRIPTAELFARIDAVDASTVKRVANKYIYDKVRHCN 508


>At3g02090.1 68416.m00174 mitochondrial processing peptidase beta
           subunit, putative similar to mitochondrial processing
           peptidase beta subunit, mitochondrial precursor,
           Beta-MPP [Human] SWISS-PROT:O75439
          Length = 531

 Score =  134 bits (325), Expect = 5e-32
 Identities = 60/130 (46%), Positives = 90/130 (69%)
 Frame = +1

Query: 49  DDSMPLAHVAIAVEGAGWTDADNIPLMVANTLIGAWDRSQGGGSNNASYLARAASVGNLC 228
           DD +PLA  A+A EGA WTD D++ LMV  T++G+W+++ GGG +  S L +  ++  + 
Sbjct: 330 DDDLPLAQFAVAFEGASWTDPDSVALMVMQTMLGSWNKNVGGGKHVGSDLTQRVAINEIA 389

Query: 229 HSFQSFNTCYKDTGLWGIYFVAESLQLDDMLYNIXKEWMKLCTSVTEGEVERAKNLLKTN 408
            S  +FNT YKDTGL+G+Y VA++  LDD+ Y I  E  KL   V++ +V RA+N LK++
Sbjct: 390 ESIMAFNTNYKDTGLFGVYAVAKADCLDDLSYAIMYEVTKLAYRVSDADVTRARNQLKSS 449

Query: 409 MLLQLDGTTP 438
           +LL +DGT+P
Sbjct: 450 LLLHMDGTSP 459



 Score = 51.2 bits (117), Expect = 8e-07
 Identities = 23/43 (53%), Positives = 30/43 (69%)
 Frame = +2

Query: 440 VCEDIGRQMLCYNRRIPIHELDARIESVTVXNVRDVCYKYLFD 568
           + EDIGRQ+L Y RRIP  EL ARI++V    V+ V  KY++D
Sbjct: 460 IAEDIGRQLLTYGRRIPTAELFARIDAVDASTVKRVANKYIYD 502



 Score = 31.1 bits (67), Expect = 0.97
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 579 AVAAVGPTEGLPDYTRIXGGMYWGQ 653
           A++A+GP + LPDY +     YW +
Sbjct: 506 AISAIGPIQDLPDYNKFRRRTYWNR 530


>At3g16480.1 68416.m02103 mitochondrial processing peptidase alpha
           subunit, putative similar to mitochondrial processing
           peptidase alpha subunit, mitochondrial precursor,
           Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
           [Potato] SWISS-PROT:P29677
          Length = 499

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 17/53 (32%), Positives = 30/53 (56%)
 Frame = +2

Query: 419 NLMEPLLVCEDIGRQMLCYNRRIPIHELDARIESVTVXNVRDVCYKYLFDPLS 577
           NL   ++  EDIGRQ+L Y  R P+ +    ++ +T+ ++ D   K +  PL+
Sbjct: 426 NLESRMIAAEDIGRQILTYGERKPVDQFLKTVDQLTLKDIADFTSKVITKPLT 478



 Score = 36.3 bits (80), Expect = 0.026
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 5/124 (4%)
 Frame = +1

Query: 70  HVAIAVEGAGWT-DADNIPLMVANTLIGAWDRSQGGGSNNASYLARAASVGNLCHSFQS- 243
           H A+A E  GW  + + I   V   L+G       GG     +      + N    FQS 
Sbjct: 305 HFALAFEVPGWNNEKEAIIATVLQMLMGGGGSFSAGGPGKGMHSWLYLRLLNQHQQFQSC 364

Query: 244 --FNTCYKDTGLWGIYFVAESLQLDDMLYNIXKEWMKLCT-SVTEGEVERAKNLLKTNML 414
             F + + +TGL+GIY           +  +  E   +    V +  ++RAK   K+ +L
Sbjct: 365 TAFTSVFNNTGLFGIYGCTSPEFASQGIELVASEMNAVADGKVNQKHLDRAKAATKSAIL 424

Query: 415 LQLD 426
           + L+
Sbjct: 425 MNLE 428


>At1g51980.1 68414.m05863 mitochondrial processing peptidase alpha
           subunit, putative similar to mitochondrial processing
           peptidase alpha subunit, mitochondrial precursor,
           Alpha-MPP (Ubiquinol-cytochrome C reductase subunit II)
           [Potato] SWISS-PROT:P29677
          Length = 503

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 17/53 (32%), Positives = 30/53 (56%)
 Frame = +2

Query: 419 NLMEPLLVCEDIGRQMLCYNRRIPIHELDARIESVTVXNVRDVCYKYLFDPLS 577
           NL   ++  EDIGRQ+L Y  R P+ +    ++ +T+ ++ D   K +  PL+
Sbjct: 430 NLESRMIAAEDIGRQILTYGERKPVDQFLKSVDQLTLKDIADFTSKVISKPLT 482



 Score = 38.7 bits (86), Expect = 0.005
 Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 5/124 (4%)
 Frame = +1

Query: 70  HVAIAVEGAGWT-DADNIPLMVANTLIGAWDRSQGGGSNNASYLARAASVGNLCHSFQS- 243
           H A+A E  GW  + + +   V   L+G       GG     +      V N     QS 
Sbjct: 309 HFAVAFEVPGWNNEKEAVTATVLQMLMGGGGSFSAGGPGKGMHSWLYRRVLNEYQEVQSC 368

Query: 244 --FNTCYKDTGLWGIYFVAESLQLDDMLYNIXKEWMKLC-TSVTEGEVERAKNLLKTNML 414
             F + + DTGL+GIY  +        +    KE   +    V +  ++RAK   K+ +L
Sbjct: 369 TAFTSIFNDTGLFGIYGCSSPQFAAKAIELAAKELKDVAGGKVNQAHLDRAKAATKSAVL 428

Query: 415 LQLD 426
           + L+
Sbjct: 429 MNLE 432


>At1g33250.1 68414.m04110 fringe-related protein + weak similarity
           to Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 548

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 9/23 (39%), Positives = 18/23 (78%)
 Frame = +2

Query: 437 LVCEDIGRQMLCYNRRIPIHELD 505
           LV +D+  ++LC+ R +P+H++D
Sbjct: 474 LVKDDLKTKLLCFPRSLPLHKVD 496


>At1g02020.2 68414.m00122 nitroreductase family protein contains
           Pfam PF00881: nitroreductase family protein profile;
           contains Prosite PS00343: Gram-positive cocci surface
           proteins 'anchoring' hexapeptide
          Length = 543

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 382 AQLHLQLQMYRVSSIPXGCYITYR 311
           A++HL L ++RVS +P G Y+  R
Sbjct: 464 AEVHLALFVHRVSGLPKGLYLLVR 487


>At1g02020.1 68414.m00121 nitroreductase family protein contains
           Pfam PF00881: nitroreductase family protein profile;
           contains Prosite PS00343: Gram-positive cocci surface
           proteins 'anchoring' hexapeptide
          Length = 642

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 382 AQLHLQLQMYRVSSIPXGCYITYR 311
           A++HL L ++RVS +P G Y+  R
Sbjct: 464 AEVHLALFVHRVSGLPKGLYLLVR 487


>At5g63900.1 68418.m08023 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 557

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = -3

Query: 436 EWFHQVAKACWS*VSS*HAQLHLQL-QMYRVSSIPXGCYITYRQVVDSQLQSK 281
           +WF+ +AKAC S V    +Q  LQ+   Y +S +P          V +Q Q K
Sbjct: 74  KWFYSLAKACMSCVDQ-DSQQQLQIVPKYDLSCLPSNIASESSSDVSNQKQKK 125


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,339,424
Number of Sequences: 28952
Number of extensions: 265446
Number of successful extensions: 659
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 659
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1970388800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)