Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G11
         (578 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24599| Best HMM Match : Complex1_24kDa (HMM E-Value=0)             186   9e-48
SB_2688| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.8  
SB_54676| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_37644| Best HMM Match : fn3 (HMM E-Value=1.6e-19)                   28   6.3  
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_43177| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.4  
SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30)                  27   8.4  

>SB_24599| Best HMM Match : Complex1_24kDa (HMM E-Value=0)
          Length = 487

 Score =  186 bits (454), Expect = 9e-48
 Identities = 84/139 (60%), Positives = 104/139 (74%)
 Frame = +1

Query: 160 HRDTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMIPLLDLAQRXNGGWLPTSAMH 339
           HRDT  +NP +PFEF   N KR +++L  YP GH++ A+IPLLDLAQR + GWLP SAM+
Sbjct: 23  HRDTDGNNPDLPFEFNEANLKRAKSILNNYPTGHEKAAVIPLLDLAQRQHDGWLPISAMN 82

Query: 340 KVAEILNLPRMRVYEVATFYTMFIRRPIGKYHVQVCTTTPCWLRGSDAVLKAIKEATGCE 519
            VA+ LN+PRMRVYEVATFYTMF R P+GKYHVQVCTTTPC LR +D +L  +K   G +
Sbjct: 83  YVADFLNMPRMRVYEVATFYTMFNREPVGKYHVQVCTTTPCQLRNADDLLDTLKSKLGIK 142

Query: 520 VGGNSPCGKFSVSEVECLG 576
            G  S  G F+++ VECLG
Sbjct: 143 EGETSKDGMFTLTVVECLG 161


>SB_2688| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 199

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 530 FPPTSQPVASLIAFKTASDPRSQHGVVVHTCT 435
           FP  S P A   A + A DPR +HG+  H  T
Sbjct: 2   FPSVSDPRAKA-ALRRARDPRGEHGLRHHPTT 32


>SB_54676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 926

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = -3

Query: 564  NLRNRKFPTRAIPTDFTTRCFLDSFQNSIRSTKPAWSRCTHLYMILSYWS 415
            N R + + ++A     TTR ++ S + SI ST  +    + +Y+ L  WS
Sbjct: 864  NRRLKWWQSKARQKGTTTRIYVASLEISISSTSSSCCVSSFVYLFLKKWS 913


>SB_13906| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1067

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 125 PLLPSSMTVSSSTETPLKTTLVSRLNL 205
           P L SSMT +S+T TP +   +S L L
Sbjct: 598 PSLESSMTTNSTTSTPAEAVAISSLVL 624


>SB_37644| Best HMM Match : fn3 (HMM E-Value=1.6e-19)
          Length = 256

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +1

Query: 166 DTPEDNPSIPFEFTAPNQKRVEALLAIYPEGHKRGAMI 279
           DTP D P I  +F  P+   ++ + +  P G++ G ++
Sbjct: 111 DTP-DRPPIDLQFALPSPTSLDVMWSPVPRGYENGVIL 147


>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 797

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 478 DAVLKAIKEATGCEVGGNSP 537
           +A L AI   TGCE+GG  P
Sbjct: 73  EAALDAISALTGCELGGRYP 92


>SB_43177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 471

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = -3

Query: 498 DSFQNSIRSTKPAWSRCTHLYMILSYWSPNKHSIECCNFIHSHSW*V*NFSYFVHGRSW 322
           D ++++     P+  +C + YM L    PN  S++C   +    W      +F   R+W
Sbjct: 262 DRYEDNSNRESPSKRKC-YDYMCLDNELPNALSVDCVIALECVGWPEIASGFFKRSRNW 319


>SB_3438| Best HMM Match : RVT_1 (HMM E-Value=1.3e-30)
          Length = 1405

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 569 HSTSETENFPQGLFPPTSQPVASLIAFKTASDPRSQHGVV 450
           H+T + + +P  LF P   P   L+  K   D   Q GV+
Sbjct: 256 HTTLKPDTYPVCLFTPRKVPHPLLLKVKLELDKMIQQGVI 295


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,991,177
Number of Sequences: 59808
Number of extensions: 360249
Number of successful extensions: 839
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 839
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)