Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G07
         (581 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067616-2|AAC19188.2|  551|Caenorhabditis elegans Deubiquitylat...    34   0.085
AF025452-6|AAK71871.1|  323|Caenorhabditis elegans Serpentine re...    33   0.20 
U41020-1|AAA82331.2|  470|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z95559-2|CAB09000.3|  520|Caenorhabditis elegans Hypothetical pr...    29   1.8  
Z99281-29|CAH04731.2|  438|Caenorhabditis elegans Hypothetical p...    29   2.4  
Z99281-1|CAB16504.2|  439|Caenorhabditis elegans Hypothetical pr...    29   2.4  
AF025452-8|AAB70940.1|  324|Caenorhabditis elegans Serpentine re...    29   2.4  
AF012437-1|AAC47715.1| 1846|Caenorhabditis elegans insulin recep...    29   2.4  
AC084196-6|AAK29947.2| 1843|Caenorhabditis elegans Abnormal daue...    29   2.4  
L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related p...    28   5.6  
U28928-10|AAN63432.2|  388|Caenorhabditis elegans Hypothetical p...    27   7.4  
Z49909-4|CAA90108.1|  876|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U41545-3|ABN43093.1|  152|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AY303577-1|AAP57299.1|  876|Caenorhabditis elegans cell death-re...    27   9.7  

>AF067616-2|AAC19188.2|  551|Caenorhabditis elegans Deubiquitylating
           with usp/ubp andotu domains protein 2 protein.
          Length = 551

 Score = 33.9 bits (74), Expect = 0.085
 Identities = 16/57 (28%), Positives = 30/57 (52%)
 Frame = -3

Query: 258 NCGKVEEWFRSNGVYGVASEFLFIKHPFDVTLKLLVTEAMNVTDVANVLSPTRYFKI 88
           N GK+ E F ++  +     FL +    D  +K+++  A+ + D  + L+P + FKI
Sbjct: 133 NVGKIHEGFNNDDQHDAHEFFLTLIGAVDDVMKVVLENAVMIDDFESPLNPAKVFKI 189


>AF025452-6|AAK71871.1|  323|Caenorhabditis elegans Serpentine
           receptor, class i protein30 protein.
          Length = 323

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
 Frame = +2

Query: 137 FMASVTRSFNVT-SKGCLINRNSEATPYTPLLLNHSSTLPQFETVNEF 277
           F+  +  S++V  S  C + R S+   +  + LNHSS +PQF+ + EF
Sbjct: 135 FIYVLCMSYSVAISTACHLIRISKEEQWQLIQLNHSSLIPQFQRLREF 182


>U41020-1|AAA82331.2|  470|Caenorhabditis elegans Hypothetical
           protein T27B1.2 protein.
          Length = 470

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +3

Query: 309 CPATIGKTPPTLSRDSPKMNTNWRSLATTRTRSGSMGNCTS 431
           C   +  T P  + + PK N N R+LA  R R      C+S
Sbjct: 51  CTQVVTHTDPMNNNNQPKTNANGRALAADRKRPYPCNLCSS 91


>Z95559-2|CAB09000.3|  520|Caenorhabditis elegans Hypothetical
           protein Y41E3.3 protein.
          Length = 520

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -3

Query: 465 GKTFLLQWKSEYLYSFPSTQNVSSWLQVTSSSYSSSGNLWK 343
           GK+FLL +  EYLYS   +Q   S L+  +      G  W+
Sbjct: 76  GKSFLLNFFLEYLYSLHKSQQSDSSLEWLTDDCQLHGFHWR 116


>Z99281-29|CAH04731.2|  438|Caenorhabditis elegans Hypothetical
           protein Y57G11C.49 protein.
          Length = 438

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 456 FLLQWKSEYLYSFPSTQNVSSWLQVTSS 373
           F+LQWK E+L+   S  N+ +WL++  S
Sbjct: 80  FILQWKDEFLFWNKSDYNI-TWLKLKES 106


>Z99281-1|CAB16504.2|  439|Caenorhabditis elegans Hypothetical
           protein Y57G11C.2 protein.
          Length = 439

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 456 FLLQWKSEYLYSFPSTQNVSSWLQVTSS 373
           F+LQWK E+L+   S  N+ +WL++  S
Sbjct: 80  FILQWKDEFLFWNKSDYNI-TWLKLKES 106


>AF025452-8|AAB70940.1|  324|Caenorhabditis elegans Serpentine
           receptor, class i protein31 protein.
          Length = 324

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 17/72 (23%), Positives = 35/72 (48%)
 Frame = +2

Query: 71  YQQTHLILKYLVGDNTFATSVTFMASVTRSFNVTSKGCLINRNSEATPYTPLLLNHSSTL 250
           +++ H I+K     +     + ++  +  S  +T   C   R S+   +  + LN+ S +
Sbjct: 115 FRKHHAIMKLRPTTDKVPYPIIYVLCMCYSIVITLS-CYSIRISKEEQWQLIQLNYPSMV 173

Query: 251 PQFETVNEFIVV 286
           PQF+ + EF +V
Sbjct: 174 PQFQRLREFSIV 185


>AF012437-1|AAC47715.1| 1846|Caenorhabditis elegans insulin receptor
           homolog protein.
          Length = 1846

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -3

Query: 309 NLKVVPGSTTINSFTVSNCGKV-EEWFRSNGVYGVASEFLFIKHPFDVTLKLLVTEAMNV 133
           N  VV GS TI SF + +  K  EE  RS        EF+   H  ++T  LLV E   +
Sbjct: 180 NCTVVEGSLTI-SFVLKHKTKAQEEMHRSLQPRYSQDEFITFPHLREITGTLLVFETEGL 238

Query: 132 TDVANVLSPTR 100
            D+  +    R
Sbjct: 239 VDLRKIFPNLR 249


>AC084196-6|AAK29947.2| 1843|Caenorhabditis elegans Abnormal dauer
           formation protein 2 protein.
          Length = 1843

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = -3

Query: 309 NLKVVPGSTTINSFTVSNCGKV-EEWFRSNGVYGVASEFLFIKHPFDVTLKLLVTEAMNV 133
           N  VV GS TI SF + +  K  EE  RS        EF+   H  ++T  LLV E   +
Sbjct: 177 NCTVVEGSLTI-SFVLKHKTKAQEEMHRSLQPRYSQDEFITFPHLREITGTLLVFETEGL 235

Query: 132 TDVANVLSPTR 100
            D+  +    R
Sbjct: 236 VDLRKIFPNLR 246


>L14331-9|AAA28101.2| 1845|Caenorhabditis elegans Dicer related
            protein 1 protein.
          Length = 1845

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 25/87 (28%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
 Frame = -3

Query: 570  IQTHL*ISISPLTLKPTRTSSVLSPRHRLSVFMTTGKTFLLQWKSEYLYSFPSTQNVSSW 391
            I + + + +SP  L    T+S  +    L  F T G +FL    ++YLY     Q+    
Sbjct: 1319 IDSDIGLGVSPCLLLTALTTSNAADGMSLERFETIGDSFLKFATTDYLYHTLLDQHEGK- 1377

Query: 390  LQVTSSSYSSSGNLW---KELGVFSLL 319
            L    S   S+ NL+   K+LG+  L+
Sbjct: 1378 LSFARSKEVSNCNLYRLGKKLGIPQLI 1404


>U28928-10|AAN63432.2|  388|Caenorhabditis elegans Hypothetical
           protein C44B7.12 protein.
          Length = 388

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
 Frame = -3

Query: 438 SEYL---YSFPSTQNVSS--WLQVTSSSYSSSGNLWKELGVFSLLWQDNLKVVPGSTTIN 274
           +EYL   Y  P    +SS  + + T++  +S  N W++ GV   +  D+  V+PG+T   
Sbjct: 279 TEYLTNKYKIPLEICLSSNVYSKTTTNYRNSHFNYWRKRGVPVFICTDDKGVIPGATLTE 338

Query: 273 SF 268
            +
Sbjct: 339 EY 340


>Z49909-4|CAA90108.1|  876|Caenorhabditis elegans Hypothetical
           protein C14A4.4a protein.
          Length = 876

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = -3

Query: 192 FIKHPFDVTLKLLVTEAMNVTDVANVLSPTRYFKIKCVC*YIYLCPVVRPFGLCLRFRFR 13
           ++ + +D+  + L+ +  +  D+ANV S +    IK     +Y  PV  P G     +FR
Sbjct: 433 YLLYSYDMLREQLLKQ--DTKDLANVYSESSDLCIK-----VYKKPVFNPKGYLTEIKFR 485

Query: 12  FTV 4
           FT+
Sbjct: 486 FTL 488


>U41545-3|ABN43093.1|  152|Caenorhabditis elegans Hypothetical
           protein C02F12.10 protein.
          Length = 152

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 501 SPRHRLSVFMTTGKTFLLQWKSEYLYSFPSTQ 406
           SP++  S  +   +TF   W S + YS PS Q
Sbjct: 117 SPQNPSSQHVQNLQTFFHSWPSHFAYSLPSDQ 148


>AY303577-1|AAP57299.1|  876|Caenorhabditis elegans cell
           death-related nuclease 3 protein.
          Length = 876

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 18/63 (28%), Positives = 32/63 (50%)
 Frame = -3

Query: 192 FIKHPFDVTLKLLVTEAMNVTDVANVLSPTRYFKIKCVC*YIYLCPVVRPFGLCLRFRFR 13
           ++ + +D+  + L+ +  +  D+ANV S +    IK     +Y  PV  P G     +FR
Sbjct: 433 YLLYSYDMLREQLLKQ--DTKDLANVYSESSDLCIK-----VYKKPVFNPKGYLTEIKFR 485

Query: 12  FTV 4
           FT+
Sbjct: 486 FTL 488


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,048,645
Number of Sequences: 27780
Number of extensions: 316561
Number of successful extensions: 1049
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)