Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G07
         (581 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR...    31   0.74 
At1g26110.1 68414.m03186 expressed protein                             30   0.98 
At2g17000.1 68415.m01960 mechanosensitive ion channel domain-con...    29   1.7  
At2g43950.3 68415.m05464 expressed protein                             29   2.3  
At2g43950.2 68415.m05465 expressed protein                             29   2.3  
At2g43950.1 68415.m05463 expressed protein                             29   2.3  
At1g75750.1 68414.m08798 gibberellin-regulated protein 1 (GASA1)...    29   2.3  
At5g43670.1 68418.m05337 transport protein, putative similar to ...    28   5.2  
At5g18510.1 68418.m02185 hypothetical protein                          27   6.9  
At2g42005.1 68415.m05196 amino acid transporter family protein l...    27   6.9  
At1g78040.1 68414.m09094 pollen Ole e 1 allergen and extensin fa...    27   6.9  
At5g58410.1 68418.m07314 expressed protein contains similarity t...    27   9.1  
At5g24210.1 68418.m02848 lipase class 3 family protein contains ...    27   9.1  
At3g28050.1 68416.m03501 nodulin MtN21 family protein similar to...    27   9.1  

>At4g09430.1 68417.m01553 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1039

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
 Frame = -3

Query: 261 SNCGKVEEWF--RSNGVYGVASEFLFIKHPFDVTLKL-LVTEAMNVT 130
           SNC   E+ F  +   +Y V +  +F+KH  D+T KL L+++  ++T
Sbjct: 495 SNCIPSEQKFLWKPEEIYDVLARNIFLKHVVDITSKLQLISDVSSIT 541


>At1g26110.1 68414.m03186 expressed protein
          Length = 611

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 24/72 (33%), Positives = 33/72 (45%)
 Frame = +3

Query: 333 PPTLSRDSPKMNTNWRSLATTRTRSGSMGNCTSIQISTATGKFYRSS*RPITDASAIALN 512
           PPTL +D+  ++    SL+TTR    S G   S + S  TG        P+T A    ++
Sbjct: 297 PPTLPQDTNLLSF---SLSTTRATEASTGLPLSNKPSVVTGPISPPQTTPLTSAPVAGVS 353

Query: 513 SYGSVSMLKGLL 548
           S  S    K LL
Sbjct: 354 SSISQDKPKPLL 365


>At2g17000.1 68415.m01960 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 849

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 198 FLFIKHPFDVTLKLLVTEAMNVTDVANVLS 109
           FLFI HP+DV  +LL+     V +  N+L+
Sbjct: 658 FLFIIHPYDVGDRLLIDTVEMVVEEMNILT 687


>At2g43950.3 68415.m05464 expressed protein
          Length = 280

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 20/80 (25%), Positives = 31/80 (38%)
 Frame = +2

Query: 161 FNVTSKGCLINRNSEATPYTPLLLNHSSTLPQFETVNEFIVVEPGTTFKLSCHNRENTPN 340
           ++V  K   I    +  P   L   H+    Q E   E  + EPG + +LS       P 
Sbjct: 111 YDVEEKNTFIKSTLDVHPRLQLRALHNVKAQQGEVAMEANLTEPGYSLELSSPVPIGYPR 170

Query: 341 SFQRFPEDEYELEVTCNHED 400
           +  +FP  E  L+     E+
Sbjct: 171 ATLKFPLGEISLQEKDEEEE 190


>At2g43950.2 68415.m05465 expressed protein
          Length = 333

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 20/80 (25%), Positives = 31/80 (38%)
 Frame = +2

Query: 161 FNVTSKGCLINRNSEATPYTPLLLNHSSTLPQFETVNEFIVVEPGTTFKLSCHNRENTPN 340
           ++V  K   I    +  P   L   H+    Q E   E  + EPG + +LS       P 
Sbjct: 111 YDVEEKNTFIKSTLDVHPRLQLRALHNVKAQQGEVAMEANLTEPGYSLELSSPVPIGYPR 170

Query: 341 SFQRFPEDEYELEVTCNHED 400
           +  +FP  E  L+     E+
Sbjct: 171 ATLKFPLGEISLQEKDEEEE 190


>At2g43950.1 68415.m05463 expressed protein
          Length = 343

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 20/80 (25%), Positives = 31/80 (38%)
 Frame = +2

Query: 161 FNVTSKGCLINRNSEATPYTPLLLNHSSTLPQFETVNEFIVVEPGTTFKLSCHNRENTPN 340
           ++V  K   I    +  P   L   H+    Q E   E  + EPG + +LS       P 
Sbjct: 111 YDVEEKNTFIKSTLDVHPRLQLRALHNVKAQQGEVAMEANLTEPGYSLELSSPVPIGYPR 170

Query: 341 SFQRFPEDEYELEVTCNHED 400
           +  +FP  E  L+     E+
Sbjct: 171 ATLKFPLGEISLQEKDEEEE 190


>At1g75750.1 68414.m08798 gibberellin-regulated protein 1 (GASA1) /
           gibberellin-responsive protein 1 identical to SP|P46689
           Gibberellin-regulated protein 1 precursor {Arabidopsis
           thaliana}; supporting cDNA
           gi|887938|gb|U11766.1|ATU11766
          Length = 98

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 461 KLSCCSGNLNTCTVSHRPRTCPRGC 387
           K+ C S  +  C +S RPR C R C
Sbjct: 37  KIDCGSACVARCRLSRRPRLCHRAC 61


>At5g43670.1 68418.m05337 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 794

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = -3

Query: 540 PLTLKPTRTSSVLSPR-HRLSVFMTTGKTFLLQWKSEYLYSFPSTQNVSSWLQVTSSSYS 364
           P  L PT ++   SP   R S   TT  T    W + +     S  + SS+  + SS+  
Sbjct: 100 PAELFPTYSAVEYSPLPSRQSGSNTTTPTAAASWSNGFNQGVRSMPSNSSFSSLASSTVG 159

Query: 363 SSGNLWKELG 334
             G +  ELG
Sbjct: 160 GGGGVISELG 169


>At5g18510.1 68418.m02185 hypothetical protein
          Length = 702

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 16/76 (21%), Positives = 32/76 (42%)
 Frame = -3

Query: 396 SWLQVTSSSYSSSGNLWKELGVFSLLWQDNLKVVPGSTTINSFTVSNCGKVEEWFRSNGV 217
           SWL    + Y     +WK+ G+F  +     K++  +++I S     C + + +    G 
Sbjct: 62  SWLGKMQALYEP---IWKKAGIFEAIKASTYKIIKDTSSILSIAEKWCSETKSFIFPWGE 118

Query: 216 YGVASEFLFIKHPFDV 169
             +  E + +   F V
Sbjct: 119 ATITLEDVMVLLGFSV 134


>At2g42005.1 68415.m05196 amino acid transporter family protein low
           similarity to proton/amino acid transporter 1 [Mus
           musculus] GI:21908024; contains Pfam profile PF01490:
           Transmembrane amino acid transporter protein
          Length = 413

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
 Frame = -1

Query: 365 HLRGISGKS---WGCFPY 321
           HL G+S KS   WGCFP+
Sbjct: 145 HLMGVSPKSLYIWGCFPF 162


>At1g78040.1 68414.m09094 pollen Ole e 1 allergen and extensin
           family protein contains Pfam domain, PF01190: Pollen
           proteins Ole e I family
          Length = 171

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 4/70 (5%)
 Frame = +2

Query: 257 FETVNEFIVVEPGTTFKLSCHNRENTPNSFQ----RFPEDEYELEVTCNHEDTFWVDGKL 424
           FET      + PG T KLSC +R+     +        E +Y+  V  +H D    D  L
Sbjct: 45  FETPESSYFI-PGATVKLSCKDRKTMEEVYTDKAVSDKEGKYKFIVHDDHRDQM-CDVLL 102

Query: 425 YKYSDFHCNR 454
            K SD  C++
Sbjct: 103 VKSSDKTCSK 112


>At5g58410.1 68418.m07314 expressed protein contains similarity to
            hypothetical proteins
          Length = 1873

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -2

Query: 409  PERVLVVASDLQFVFIFGESLERVGGVFPIVAGQLESRA 293
            P  + VVAS      I G SL  V  ++PI  G++ S A
Sbjct: 1633 PSELSVVASAATRAIITGSSLSTVESLWPIETGKMASLA 1671


>At5g24210.1 68418.m02848 lipase class 3 family protein contains
           Pfam profile PF01764: Lipase
          Length = 350

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 1/97 (1%)
 Frame = +2

Query: 191 NRNSEATPYTPLLLNHSSTLPQFETVNE-FIVVEPGTTFKLSCHNRENTPNSFQRFPEDE 367
           NRN   +  TP   + + TL + E + + F     G  F+ +  N ENTPNS    P   
Sbjct: 53  NRNGSESLATPWWKSFNFTLDESEILYDAFDGSIYGAVFQ-NMINYENTPNSIVVPPRYV 111

Query: 368 YELEVTCNHEDTFWVDGKLYKYSDFHCNRKVLPVVIK 478
             L  T   + + W+          H   K + V+ K
Sbjct: 112 IALRGTVPSDVSDWIHNSRIVLEKLHGGGKHMHVIRK 148


>At3g28050.1 68416.m03501 nodulin MtN21 family protein similar to
           MtN21 [Medicago truncatula] GI:2598575; contains Pfam
           profile PF00892: Integral membrane protein
          Length = 367

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 312 PATIGKTPPTLSRDSPKMNTNW 377
           P  I K+PP++S  S   N NW
Sbjct: 158 PVVIAKSPPSVSLRSQSTNPNW 179


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,304,738
Number of Sequences: 28952
Number of extensions: 295564
Number of successful extensions: 893
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 875
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)