Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_G05
         (101 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g12230.1 68417.m01940 esterase/lipase/thioesterase family pro...    25   5.1  
At1g74190.1 68414.m08592 leucine-rich repeat family protein cont...    25   5.1  
At3g14090.1 68416.m01781 exocyst subunit EXO70 family protein  c...    25   8.9  
At1g54090.1 68414.m06164 exocyst subunit EXO70 family protein co...    25   8.9  

>At4g12230.1 68417.m01940 esterase/lipase/thioesterase family
           protein low similarity to
           2-hydroxy-6-ketonona-2,4-dienedoic acid hydrolase; OhpC
           [Rhodococcus sp.] GI:8926386; contains Interpro entry
           IPR000379
          Length = 392

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = +3

Query: 15  FPFAQRPDNYNLH 53
           FPF  RPD  NLH
Sbjct: 252 FPFLSRPDEVNLH 264


>At1g74190.1 68414.m08592 leucine-rich repeat family protein
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains similarity to Cf-2.1
           [Lycopersicon pimpinellifolium] gi|1184075|gb|AAC15779
          Length = 965

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 8   ILFPIRSKAGQLQSTQRRELRSNTVLGHL 94
           +LF I+S   +L + Q  +L  N ++GHL
Sbjct: 232 LLFSIQSGICELNNMQELDLSQNKLVGHL 260


>At3g14090.1 68416.m01781 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit;
          Length = 623

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 27  QRPDNYNLHSVENYEAIRFLDIFE 98
           + P+NY  +SVE+ E I  LD FE
Sbjct: 590 RHPENYLKYSVEDIETI-VLDFFE 612


>At1g54090.1 68414.m06164 exocyst subunit EXO70 family protein
           contains Pfam domain PF03081: Exo70 exocyst complex
           subunit
          Length = 622

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 27  QRPDNYNLHSVENYEAIRFLDIFE 98
           + P+NY  +SVEN E    LD FE
Sbjct: 588 RHPENYLKYSVENLET-AVLDFFE 610


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,938,328
Number of Sequences: 28952
Number of extensions: 15279
Number of successful extensions: 54
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 12,070,560
effective HSP length: 15
effective length of database: 11,636,280
effective search space used: 209453040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)