Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F23
         (596 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g29624.1 68418.m03640 DC1 domain-containing protein contains ...    29   1.8  
At5g54020.1 68418.m06719 expressed protein                             29   2.4  
At5g43400.1 68418.m05305 expressed protein strong similarity to ...    29   2.4  
At1g71810.1 68414.m08299 ABC1 family protein contains Pfam domai...    29   2.4  
At1g58340.1 68414.m06636 MATE efflux protein-related contains Pf...    29   3.1  
At5g54050.1 68418.m06722 DC1 domain-containing protein                 28   5.4  
At4g14980.1 68417.m02302 DC1 domain-containing protein contains ...    27   9.5  

>At5g29624.1 68418.m03640 DC1 domain-containing protein contains
           Pfam PF03107: DC1 domain
          Length = 488

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 242 QFSRQKQNCGGMFRDATLDDTLCDDHLAFI-CEKDPKKLQ 126
           Q SR+ Q C     D  L+ T+CDD+  F+ C   P+K++
Sbjct: 418 QSSRRCQACDREIHDDPLNCTVCDDYSLFMRCATLPRKVK 457


>At5g54020.1 68418.m06719 expressed protein 
          Length = 556

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = -1

Query: 242 QFSRQKQNCGGMFRDATLDDTLCDDH-LAFICEKDPKKLQ 126
           Q SRQ Q CG       L  T+CDD+ L   C   P+K++
Sbjct: 406 QSSRQCQACGTKIDHDPLSCTVCDDYSLCMRCTTLPRKVK 445


>At5g43400.1 68418.m05305 expressed protein strong similarity to
           unknown protein (emb|CAB86628.1)
          Length = 655

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
 Frame = -1

Query: 404 LFAQHPAQTLTVSFDVIIRLGFYNWDEGNYFRTLDGQTLEAAGYAKWAKG-QPDNQFSRQ 228
           L+  HP +TL ++   ++  G++       FR L+GQ +E      W K  Q   +  R+
Sbjct: 128 LYKNHP-KTLALNVPALVDFGYFKDLPEILFRILEGQNMERGKNRVWRKRVQRKFKGKRE 186

Query: 227 KQN-CGGMFRDATLDD 183
           K++   G   D  L++
Sbjct: 187 KKSEISGEMEDRILEN 202


>At1g71810.1 68414.m08299 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 692

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -1

Query: 368 SFDVIIRLGFYNWDE--GNYFRTLDGQ 294
           SF+ ++  GFY+ D   GN+ RT DGQ
Sbjct: 330 SFNQLLEYGFYHADPHPGNFLRTYDGQ 356


>At1g58340.1 68414.m06636 MATE efflux protein-related contains Pfam
           profile: PF01554 uncharacterized membrane protein family
           UPF0013
          Length = 532

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 477 ATISSTLTVPVVLSFFSFMFPLHFDLWLPVVI 572
           A + + L + V+LS F +   +H D W+P+ I
Sbjct: 243 AMVLTNLNLVVLLSSFVYFTSVHSDTWVPITI 274


>At5g54050.1 68418.m06722 DC1 domain-containing protein 
          Length = 580

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 242 QFSRQKQNCGGMFRDATLDDTLCDDH-LAFICEKDPKKLQ 126
           Q SR+ Q C    +D  L+ T+CD++ L   C   P+K++
Sbjct: 429 QSSRRCQACNKEIKDDPLNCTVCDEYSLCMRCATLPRKVK 468


>At4g14980.1 68417.m02302 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 470

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -1

Query: 236 SRQKQNCGGMFRDATLDDTLCDDH-LAFICEKDPKKLQ 126
           S++ Q CG    D  L+ T+CDD+ L   C   P+K++
Sbjct: 319 SKRCQACGTETDDNLLNCTVCDDYALCMKCATLPRKVK 356


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,301,317
Number of Sequences: 28952
Number of extensions: 214069
Number of successful extensions: 550
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)