Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F22
         (452 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7066| Best HMM Match : DUF706 (HMM E-Value=2.3)                     56   1e-08
SB_5401| Best HMM Match : DUF652 (HMM E-Value=3)                       29   2.4  
SB_30481| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   3.1  
SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)              23   4.8  
SB_772| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   5.5  
SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_7066| Best HMM Match : DUF706 (HMM E-Value=2.3)
          Length = 191

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 24/38 (63%), Positives = 29/38 (76%)
 Frame = +3

Query: 276 VLEFNQYDLYTKSAAIPDIEALWPYYESLIEKYIPGVL 389
           + EFN+YDLY+KS  +PDI+ L PYYE LI KY PG L
Sbjct: 7   IREFNKYDLYSKSDDVPDIDDLVPYYEHLISKYCPGKL 44


>SB_5401| Best HMM Match : DUF652 (HMM E-Value=3)
          Length = 287

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +3

Query: 249 KGDEEIKKAVLEFNQYDLYTKSAAIPDIEALWPYYESL 362
           KG +  +K + E     +  +    P  EALWPYY+S+
Sbjct: 191 KGGDCERKVLQELGIPHVNLELYGCPKYEALWPYYDSI 228


>SB_30481| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 24.6 bits (51), Expect(2) = 3.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +3

Query: 9  YSFKDNPDTYNPKYNTEY 62
          Y+F+ N + YN +YNTEY
Sbjct: 25 YNFEYNTE-YNTEYNTEY 41



 Score = 22.2 bits (45), Expect(2) = 3.1
 Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
 Frame = +3

Query: 36  YNPKYNTEYGMYEPNCGLE-NLMVSWGHDEY 125
           YN +YNTEY         E N   +  H EY
Sbjct: 49  YNTEYNTEYNTDYTEYNTEYNTEYNTEHTEY 79


>SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 633

 Score = 23.0 bits (47), Expect(2) = 4.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 9   YSFKDNPDTYNPKYNTEY 62
           Y+ + N D YN +YNTEY
Sbjct: 295 YNTEYNTD-YNTEYNTEY 311



 Score = 23.0 bits (47), Expect(2) = 4.8
 Identities = 9/19 (47%), Positives = 10/19 (52%)
 Frame = +3

Query: 36  YNPKYNTEYGMYEPNCGLE 92
           YN +YNTEY  Y      E
Sbjct: 319 YNTEYNTEYTEYNTEYNTE 337


>SB_772| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 36  YNPK-YNTEYGMYEPNCGLENLMVSWGHDEYLYRVLVHNKSKFPKKG 173
           Y P    +E+  ++    L N +V+   D Y YR  ++N  KF K+G
Sbjct: 35  YTPSDEGSEHIEWQIRVELNNRVVTLQTDSYPYRAYINNLLKFTKEG 81


>SB_44095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3051

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +3

Query: 156  KFPKKGLYKXR*DFIR--STRGTLVVITNTF*KKGDEEIKKAVLEFNQYDLYTKSAAIPD 329
            K P KG+Y  R D  R     GT+V+ T T  ++  + I   +  F++     K    P 
Sbjct: 2304 KMPVKGMYLHRVDHTRRPMENGTVVLNTKTDNEEASKNINAGITIFHELTKNAKVIGSPP 2363

Query: 330  I 332
            +
Sbjct: 2364 V 2364


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,441,420
Number of Sequences: 59808
Number of extensions: 272330
Number of successful extensions: 901
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)