Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F20
         (574 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28447| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.17 
SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)         30   1.2  
SB_6042| Best HMM Match : HEAT (HMM E-Value=0.3)                       29   2.0  
SB_10841| Best HMM Match : C1_1 (HMM E-Value=3.2)                      29   2.0  
SB_58019| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_51011| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_41076| Best HMM Match : Ras (HMM E-Value=1.90016e-42)               28   6.2  
SB_35169| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  

>SB_28447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 777

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -1

Query: 145 CT*IVKKGGKLYCQGHDISAIV 80
           C   VKKGGK+YC GH  +AI+
Sbjct: 722 CQAYVKKGGKVYCHGHSKAAIL 743


>SB_9261| Best HMM Match : Chitin_synth_2 (HMM E-Value=2.7e-07)
          Length = 2435

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 24/87 (27%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
 Frame = +3

Query: 162  KQLEAW-QHLITDYLKATKQSTIDIREAQNSPLFNNTVINRKL-SQESVFT-ILEDMV-- 326
            K  + W Q +   Y+   KQ  + +R+ Q   L  +  +N K  S E++   +L+D    
Sbjct: 1287 KNKKRWSQVMYMSYVLDHKQKILGVRDDQTFILTTDADVNFKHDSMEALIDYMLQDETIG 1346

Query: 327  -KCGRAAPIDKSKNVW-EIYWHSLDEW 401
              CGR  P+ K   VW +I+ +++  W
Sbjct: 1347 AVCGRTHPMGKGPLVWYQIFDYAIGHW 1373


>SB_6042| Best HMM Match : HEAT (HMM E-Value=0.3)
          Length = 168

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 28/103 (27%), Positives = 45/103 (43%), Gaps = 4/103 (3%)
 Frame = +3

Query: 204 KATKQSTIDIREAQNSPLFNNTVINRKLSQESVFTILEDMVKCGRAAPIDKSKNVWEIYW 383
           K + Q ++ I +   S   ++    RK S E  F +L  +   G     +K +  WE+ W
Sbjct: 33  KKSLQDSVQIEDLVVSCFEHSNENIRKASSEC-FALLASLSSGGGGQ--NKQQINWELQW 89

Query: 384 H----SLDEWGNMIYSWASENGMTNSVCTLFELREGEDTVDQE 500
                SL +   M+Y   SE+  + S   L EL   +D  D+E
Sbjct: 90  RRLLLSLKQSLEMLYEDTSEHSSSESRVQLGELLSLKDVPDEE 132


>SB_10841| Best HMM Match : C1_1 (HMM E-Value=3.2)
          Length = 544

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
 Frame = -3

Query: 545 EFKSLYYYIHVEAVEFLINCVFAFS*FKQSANGIGHTIFRSPTIYHITPLIQ-RVPIYFP 369
           +++ + YY+H       + C    S  + + NG+  +I        IT  IQ RV IY+ 
Sbjct: 432 QWRVIIYYLHYGMHS--MGCHHLLSALRNAFNGVSSSIC-------ITVCIQWRVIIYYV 482

Query: 368 YIFTLIYGRSSATFHHIL*NSKDRFL*QFSIYNCVIK--QWTILCFSYVYG 222
           +     YGR S   HH+L   +D +        C+ +  QW ++ ++ + G
Sbjct: 483 H-----YGRHSMACHHLLCALRDAYNGVSPSTVCITECIQWRVIIYNCITG 528


>SB_58019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 83

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 189 ITDYLKATKQSTIDIREAQNSPLFNNTVINRK 284
           I D    T+++T+D ++ +  P FN+TV+  K
Sbjct: 40  ILDLTDQTEKTTLDSKKLRVEPYFNSTVVRSK 71


>SB_51011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 28  SKLCQNRIYDINCSY 72
           SKLC+ R+ DINC++
Sbjct: 65  SKLCRQRVVDINCNF 79


>SB_41076| Best HMM Match : Ras (HMM E-Value=1.90016e-42)
          Length = 704

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 134 NSSAHRNKGETIRSMATSHNRLFKSNKTINHRHKRSTE 247
           NS + RN+G+TI+  A S  R  +S +    R+K   E
Sbjct: 626 NSKSERNQGQTIKVNAISMKRPHESRRKQEKRNKMRPE 663


>SB_35169| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +2

Query: 98  VALAV*FSPFFYNSSAHRNKGETIRSMATSHNRLFKSNKTINHRHKRSTE 247
           + LAV  S  + +   H N+  T++  +T H R  KS++ +N    R ++
Sbjct: 179 IVLAVVHSLLYMSFRRHLNRRNTLKRRSTPHKR-EKSDRRLNREKTRQSD 227


>SB_37158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1421

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +3

Query: 72   HYNTMADISWPWQY--NFPPFFTIQVHTETKAKQLEAWQHLIT 194
            +YN+M  + W   +  NF PF   ++     A +   WQH++T
Sbjct: 1008 YYNSMDVLWWVRGHGRNFCPFVAYRIGEIQMATEPSQWQHVVT 1050


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,285,213
Number of Sequences: 59808
Number of extensions: 360765
Number of successful extensions: 1014
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 936
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1013
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)