Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_F20
(574 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g19003.2 68417.m02800 expressed protein contains Pfam PF05871... 122 2e-28
At4g19003.1 68417.m02799 expressed protein contains Pfam PF05871... 122 2e-28
At4g30130.1 68417.m04283 expressed protein contains Pfam domains... 35 0.034
At5g22490.1 68418.m02625 condensation domain-containing protein ... 31 0.41
At4g12840.1 68417.m02012 expressed protein contains Pfam profile... 29 2.9
At2g29350.1 68415.m03566 tropinone reductase, putative / tropine... 28 3.8
At5g50390.1 68418.m06241 pentatricopeptide (PPR) repeat-containi... 28 5.1
At4g00770.1 68417.m00107 expressed protein 28 5.1
At2g44350.2 68415.m05517 citrate synthase, mitochondrial, putati... 28 5.1
At2g44350.1 68415.m05516 citrate synthase, mitochondrial, putati... 28 5.1
At2g21090.1 68415.m02503 pentatricopeptide (PPR) repeat-containi... 28 5.1
At5g66370.1 68418.m08368 hypothetical protein similar to unknown... 27 6.7
At2g42620.1 68415.m05275 F-box family protein (ORE9) E3 ubiquiti... 27 6.7
At2g29360.1 68415.m03567 tropinone reductase, putative / tropine... 27 6.7
At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-rel... 27 8.9
>At4g19003.2 68417.m02800 expressed protein contains Pfam PF05871:
Eukaryotic protein of unknown function (DUF852)
Length = 179
Score = 122 bits (294), Expect = 2e-28
Identities = 56/158 (35%), Positives = 95/158 (60%)
Frame = +3
Query: 84 MADISWPWQYNFPPFFTIQVHTETKAKQLEAWQHLITDYLKATKQSTIDIREAQNSPLFN 263
+AD P +N+PP+FT+Q +T+ KQ++ W+ LI DY K+ K I + E + PLF+
Sbjct: 4 LADFKLPQFFNYPPYFTLQPVRDTREKQIQLWKELILDYCKSQKIFLIGVEE--DFPLFS 61
Query: 264 NTVINRKLSQESVFTILEDMVKCGRAAPIDKSKNVWEIYWHSLDEWGNMIYSWASENGMT 443
N+ I+R LS E+ T L +V GRA +DK I WH + +W +++ + +NG+
Sbjct: 62 NSAIDRSLSHEARETFLSAIVGEGRAEWLDKGHRKCLILWHRIQDWADIVLQFVRDNGLE 121
Query: 444 NSVCTLFELREGEDTVDQEFHGLDMNIIIKAFKFIRTE 557
+SV T+ E+R G +++ E G+D I+++A K + +
Sbjct: 122 DSVMTVEEIRSGTESLGTELQGIDRTILMRALKLLENK 159
>At4g19003.1 68417.m02799 expressed protein contains Pfam PF05871:
Eukaryotic protein of unknown function (DUF852)
Length = 179
Score = 122 bits (294), Expect = 2e-28
Identities = 56/158 (35%), Positives = 95/158 (60%)
Frame = +3
Query: 84 MADISWPWQYNFPPFFTIQVHTETKAKQLEAWQHLITDYLKATKQSTIDIREAQNSPLFN 263
+AD P +N+PP+FT+Q +T+ KQ++ W+ LI DY K+ K I + E + PLF+
Sbjct: 4 LADFKLPQFFNYPPYFTLQPVRDTREKQIQLWKELILDYCKSQKIFLIGVEE--DFPLFS 61
Query: 264 NTVINRKLSQESVFTILEDMVKCGRAAPIDKSKNVWEIYWHSLDEWGNMIYSWASENGMT 443
N+ I+R LS E+ T L +V GRA +DK I WH + +W +++ + +NG+
Sbjct: 62 NSAIDRSLSHEARETFLSAIVGEGRAEWLDKGHRKCLILWHRIQDWADIVLQFVRDNGLE 121
Query: 444 NSVCTLFELREGEDTVDQEFHGLDMNIIIKAFKFIRTE 557
+SV T+ E+R G +++ E G+D I+++A K + +
Sbjct: 122 DSVMTVEEIRSGTESLGTELQGIDRTILMRALKLLENK 159
>At4g30130.1 68417.m04283 expressed protein contains Pfam domains,
PF04782: Protein of unknown function (DUF632) and
PF04783: Protein of unknown function (DUF630)
Length = 725
Score = 35.1 bits (77), Expect = 0.034
Identities = 33/130 (25%), Positives = 57/130 (43%), Gaps = 8/130 (6%)
Frame = +3
Query: 135 IQVHTETKAKQLEAWQHL-ITDYLKATKQSTIDIREAQNSPLFNNTVINRKLSQESVFTI 311
I++ +K Q EA L + YL A+ + + E P T +S F +
Sbjct: 83 IEISPPSKMVQSEAESKLNVNSYLMASGSRPVRVEE--KPPRSPETFQVETYGADSFFGM 140
Query: 312 LEDMVKCGRAA----PIDKSKNVWEIYWH---SLDEWGNMIYSWASENGMTNSVCTLFEL 470
+M G + P + W+ +W+ +LD++G YS+ ++NGM + + L +
Sbjct: 141 NMNMNSPGLGSHNIPPPSPQNSQWDFFWNPFSALDQYG---YSYDNQNGMDDDMRRLRRV 197
Query: 471 REGEDTVDQE 500
RE E D E
Sbjct: 198 REEEGIPDLE 207
>At5g22490.1 68418.m02625 condensation domain-containing protein
contains Pfam profile PF00668: Condensation domain
Length = 482
Score = 31.5 bits (68), Expect = 0.41
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +3
Query: 273 INRKLSQESVFTILEDMVKCGRAAPIDKSKNVWEIY 380
I+ KL++E V +ED + P+D++K +WE++
Sbjct: 86 IDPKLTEEDVEWFVEDYISSITMIPLDRTKPLWEVH 121
>At4g12840.1 68417.m02012 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 413
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 460 KVQTELVIPFSEAQLYIILPHSSNECQYISHTFLLLSMGA 341
K L+IP S + I LPH + +YI HT L+ GA
Sbjct: 224 KYHNLLLIPIS-LKCIINLPHETRNQEYIEHTKSLVGRGA 262
>At2g29350.1 68415.m03566 tropinone reductase, putative / tropine
dehydrogenase, putative similar to tropinone reductase
SP:P50165 from [Datura stramonium]
Length = 269
Score = 28.3 bits (60), Expect = 3.8
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +3
Query: 405 NMIYSWASENGMTNSVCTLFELRE-GEDTVDQEF 503
N+ WAS+N TNSVC + D D+EF
Sbjct: 180 NLACEWASDNIRTNSVCPWYITTPLSNDFFDEEF 213
>At5g50390.1 68418.m06241 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 701
Score = 27.9 bits (59), Expect = 5.1
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +3
Query: 399 WGNMIYSWASENGMTNSVCTLFELREGEDTVDQEFHGLDMNIIIKAFKFIRTER 560
W N+I +A ++C L+++R+ ++DQ + + I K K T++
Sbjct: 293 WNNVIAGYALHGYSEEALCLLYDMRDSGVSIDQFTLSIMIRISTKLAKLELTKQ 346
>At4g00770.1 68417.m00107 expressed protein
Length = 440
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/51 (33%), Positives = 27/51 (52%)
Frame = +3
Query: 348 IDKSKNVWEIYWHSLDEWGNMIYSWASENGMTNSVCTLFELREGEDTVDQE 500
I + +++ I +LDEWG+M + E G T ++ E DTVD+E
Sbjct: 243 IQRFESLANISPFNLDEWGSMDEASCMEGGQETD--TKYDDDENCDTVDRE 291
>At2g44350.2 68415.m05517 citrate synthase, mitochondrial, putative
strong similarity to SP|P20115 Citrate synthase,
mitochondrial precursor {Arabidopsis thaliana};
contains Pfam profile PF00285: Citrate synthase
Length = 474
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 464 KQSANGIGHTIFRSPTIYHITPLIQRVPIYFPYIFTLIY 348
K NGI + F PT LI RVP+ Y++ +Y
Sbjct: 191 KAYENGIHKSKFWEPTYEDCLNLIARVPVVAAYVYRRMY 229
>At2g44350.1 68415.m05516 citrate synthase, mitochondrial, putative
strong similarity to SP|P20115 Citrate synthase,
mitochondrial precursor {Arabidopsis thaliana};
contains Pfam profile PF00285: Citrate synthase
Length = 473
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -3
Query: 464 KQSANGIGHTIFRSPTIYHITPLIQRVPIYFPYIFTLIY 348
K NGI + F PT LI RVP+ Y++ +Y
Sbjct: 190 KAYENGIHKSKFWEPTYEDCLNLIARVPVVAAYVYRRMY 228
>At2g21090.1 68415.m02503 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 597
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/56 (28%), Positives = 28/56 (50%)
Frame = +3
Query: 324 VKCGRAAPIDKSKNVWEIYWHSLDEWGNMIYSWASENGMTNSVCTLFELREGEDTV 491
+KCG+ PID K +++ +L W NM+ + ++GM +F+ D V
Sbjct: 93 MKCGK--PIDACKVFDQMHLRNLYSWNNMVSGYV-KSGMLVRARVVFDSMPERDVV 145
>At5g66370.1 68418.m08368 hypothetical protein similar to unknown
protein (emb CAB62624.1)
Length = 150
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -2
Query: 441 SYHFQKPNYISYYPTHPTSANIFPIHFYSYLWAQLCHIS-PYP 316
SY+ Q P+Y SY+P+ + P ++ L Q H PYP
Sbjct: 102 SYYGQPPSYNSYWPSDNCYSRQHPPYYSQSLAMQPYHHQYPYP 144
>At2g42620.1 68415.m05275 F-box family protein (ORE9) E3 ubiquitin
ligase SCF complex F-box subunit; identical to F-box
containing protein ORE9 GI:15420162 from [Arabidopsis
thaliana]
Length = 693
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 443 GHTIFRSPTIYHITPLIQRVPIYFPYIFTL-IYGRSSATFHHIL 315
GHT+ S I H L R+ FP++ +L +Y RS ++ +L
Sbjct: 79 GHTLLASLPIDHQNLLALRLKFCFPFVESLNVYTRSPSSLELLL 122
>At2g29360.1 68415.m03567 tropinone reductase, putative / tropine
dehydrogenase, putative similar to tropinone reductase
SP:P50165 from [Datura stramonium]
Length = 271
Score = 27.5 bits (58), Expect = 6.7
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = +3
Query: 405 NMIYSWASENGMTNSVCTLF 464
N+ WAS+N TNSVC F
Sbjct: 181 NLACEWASDNIRTNSVCPWF 200
>At4g02660.1 68417.m00361 WD-40 repeat family protein / beige-related
contains Pfam PF00400: WD domain, G-beta repeat; similar
to BEIGE (GI:3928547) [Rattus norvegicus]; lysosomal
trafficking regulator - Bos taurus, EMBL: AF114785
Length = 3471
Score = 27.1 bits (57), Expect = 8.9
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = -1
Query: 451 TELVIPFSEAQLYIILPHSSNECQYISHTFLLLSMGAALPHFTISSRIV 305
T VI +Q Y+++ SS++C I LS LP+F++ +V
Sbjct: 3324 TAKVICLRVSQPYMMIASSSDDCTVIIWDLSSLSFVRQLPNFSVPVTVV 3372
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,037,497
Number of Sequences: 28952
Number of extensions: 246060
Number of successful extensions: 674
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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