Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F16
         (629 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9853| Best HMM Match : Lipase_3 (HMM E-Value=0.00075)               29   4.1  
SB_20958| Best HMM Match : Peptidase_C15 (HMM E-Value=0.001)           28   7.2  
SB_39702| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25)           27   9.5  
SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)                  27   9.5  

>SB_9853| Best HMM Match : Lipase_3 (HMM E-Value=0.00075)
          Length = 593

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +1

Query: 154 PARTRNLSICLFHTLYNILFAVVLPYSIFVEIYK 255
           P+R   +S+CL   L  +++ V+L  S+F E+++
Sbjct: 93  PSRRNIMSVCLAGLLPCVIYIVILVLSLFWEVFR 126


>SB_20958| Best HMM Match : Peptidase_C15 (HMM E-Value=0.001)
          Length = 225

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 11/17 (64%), Positives = 13/17 (76%)
 Frame = +3

Query: 141 VRIASRSHSEPFYLSIS 191
           VR+ SR HS PFYL +S
Sbjct: 128 VRVTSRLHSPPFYLIVS 144


>SB_39702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 85

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 469 TQRTYDSNQWRSGGDGRGGRNTIFHPLISI 558
           T R +  +  R  GDGRGG++T  H L  +
Sbjct: 7   TTRHFMRSHARMKGDGRGGKHTSIHTLAPV 36


>SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25)
          Length = 2146

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -2

Query: 505 RYATD*SHKYVG*RSIIVSRGNAVQKNMKIQTEYYLSIDITKTYS 371
           R+  D S   +   S ++SR   + +++ I+T  Y+S+ + K  S
Sbjct: 774 RFVVDKSVNLIQHLSSMISRSTTIDRDVTIKTHSYISVKVAKRRS 818


>SB_227| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
          Length = 1003

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 406 IPSVFSYFSEPRSLAIQ*YFFTQRTYDSNQWRSGGDGR-GGRNTIFHPLISI 558
           +  +FSY+ E +S  I   F      ++N  RSGG    G  N +   ++S+
Sbjct: 141 VTGIFSYYQESKSSKIMESFKNLVPQEANVLRSGGRKTVGAENLVIGDVVSV 192


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,136,239
Number of Sequences: 59808
Number of extensions: 306584
Number of successful extensions: 707
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 628
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)