Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_F13
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39851-12|AAV58884.1|  137|Caenorhabditis elegans Hypothetical p...   123   9e-29
U39851-11|AAV58883.1|  171|Caenorhabditis elegans Hypothetical p...   123   9e-29
U39851-10|AAM22035.1|  144|Caenorhabditis elegans Hypothetical p...   123   9e-29
AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical ...    31   0.87 
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    28   6.1  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    28   6.1  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    28   6.1  

>U39851-12|AAV58884.1|  137|Caenorhabditis elegans Hypothetical
           protein C23G10.2c protein.
          Length = 137

 Score =  123 bits (297), Expect = 9e-29
 Identities = 58/131 (44%), Positives = 85/131 (64%)
 Frame = +3

Query: 6   AHRVVKTIVTSPDVYKPVGPYSQAILSDKTLYISGVLGMDRDAQLVSGGVGAQTRQVLEN 185
           A +V + I++S +    +GPYSQA+ +  T+Y+SG LG+D     +  GV  QT Q L+N
Sbjct: 2   AQKVTRQIISSANAPGAIGPYSQAVRAGNTIYLSGSLGLDPKTGDLKEGVVEQTHQSLKN 61

Query: 186 LKHVVEAGGGSLESVIKTTILLANMDDFQCVNQIYAEYFPKNCPARATYQVTKLPLNAAV 365
           L  V++A G    +V+KTT+LL N+ DF  VN++Y +YF    PARA YQV  LP    V
Sbjct: 62  LGEVLKAAGADYGNVVKTTVLLQNIADFAAVNEVYGQYFKSPYPARAAYQVAALPKGGLV 121

Query: 366 EIEAIALSGDL 398
           EIEA+A++G++
Sbjct: 122 EIEAVAIAGEI 132


>U39851-11|AAV58883.1|  171|Caenorhabditis elegans Hypothetical
           protein C23G10.2a protein.
          Length = 171

 Score =  123 bits (297), Expect = 9e-29
 Identities = 58/131 (44%), Positives = 85/131 (64%)
 Frame = +3

Query: 6   AHRVVKTIVTSPDVYKPVGPYSQAILSDKTLYISGVLGMDRDAQLVSGGVGAQTRQVLEN 185
           A +V + I++S +    +GPYSQA+ +  T+Y+SG LG+D     +  GV  QT Q L+N
Sbjct: 36  AQKVTRQIISSANAPGAIGPYSQAVRAGNTIYLSGSLGLDPKTGDLKEGVVEQTHQSLKN 95

Query: 186 LKHVVEAGGGSLESVIKTTILLANMDDFQCVNQIYAEYFPKNCPARATYQVTKLPLNAAV 365
           L  V++A G    +V+KTT+LL N+ DF  VN++Y +YF    PARA YQV  LP    V
Sbjct: 96  LGEVLKAAGADYGNVVKTTVLLQNIADFAAVNEVYGQYFKSPYPARAAYQVAALPKGGLV 155

Query: 366 EIEAIALSGDL 398
           EIEA+A++G++
Sbjct: 156 EIEAVAIAGEI 166


>U39851-10|AAM22035.1|  144|Caenorhabditis elegans Hypothetical
           protein C23G10.2b protein.
          Length = 144

 Score =  123 bits (297), Expect = 9e-29
 Identities = 58/131 (44%), Positives = 85/131 (64%)
 Frame = +3

Query: 6   AHRVVKTIVTSPDVYKPVGPYSQAILSDKTLYISGVLGMDRDAQLVSGGVGAQTRQVLEN 185
           A +V + I++S +    +GPYSQA+ +  T+Y+SG LG+D     +  GV  QT Q L+N
Sbjct: 9   AQKVTRQIISSANAPGAIGPYSQAVRAGNTIYLSGSLGLDPKTGDLKEGVVEQTHQSLKN 68

Query: 186 LKHVVEAGGGSLESVIKTTILLANMDDFQCVNQIYAEYFPKNCPARATYQVTKLPLNAAV 365
           L  V++A G    +V+KTT+LL N+ DF  VN++Y +YF    PARA YQV  LP    V
Sbjct: 69  LGEVLKAAGADYGNVVKTTVLLQNIADFAAVNEVYGQYFKSPYPARAAYQVAALPKGGLV 128

Query: 366 EIEAIALSGDL 398
           EIEA+A++G++
Sbjct: 129 EIEAVAIAGEI 139


>AL032634-1|CAC35856.2| 1195|Caenorhabditis elegans Hypothetical
           protein Y39G8C.1 protein.
          Length = 1195

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +1

Query: 55  RLDPTVKPFYLTRLSIYREYSAW 123
           R D  VK F+L  LS+ REY AW
Sbjct: 247 RTDSDVKKFHLLHLSLLREYLAW 269


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical protein
             K07E12.1b protein.
          Length = 12268

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 24    TIVTSPDVYKPVGPYSQAILSDKT-LYISGVLGMDRDA 134
             TI+ + D  KP+GP  Q + +D +  YI  V+G D  A
Sbjct: 10704 TIIENDDEGKPIGPDGQVLPTDASGNYIYPVIGPDGQA 10741


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical protein
             K07E12.1a protein.
          Length = 13100

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 24    TIVTSPDVYKPVGPYSQAILSDKT-LYISGVLGMDRDA 134
             TI+ + D  KP+GP  Q + +D +  YI  V+G D  A
Sbjct: 10749 TIIENDDEGKPIGPDGQVLPTDASGNYIYPVIGPDGQA 10786


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin protein.
          Length = 13100

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +3

Query: 24    TIVTSPDVYKPVGPYSQAILSDKT-LYISGVLGMDRDA 134
             TI+ + D  KP+GP  Q + +D +  YI  V+G D  A
Sbjct: 10749 TIIENDDEGKPIGPDGQVLPTDASGNYIYPVIGPDGQA 10786


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,501,508
Number of Sequences: 27780
Number of extensions: 312008
Number of successful extensions: 828
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 748
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)