Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0006_F13
(618 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g20390.1 68416.m02583 endoribonuclease L-PSP family protein c... 125 3e-29
At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein c... 39 0.003
At4g35890.1 68417.m05097 La domain-containing protein contains P... 29 3.3
At4g18150.1 68417.m02697 hypothetical protein 29 3.3
At3g05480.1 68416.m00600 cell cycle checkpoint control protein f... 29 3.3
At1g34060.1 68414.m04222 alliinase family protein contains Pfam ... 28 4.3
At5g52480.1 68418.m06511 leucine-rich repeat protein, N7-related... 28 5.7
At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -relat... 28 5.7
At2g40113.1 68415.m04932 hypothetical protein 27 7.5
>At3g20390.1 68416.m02583 endoribonuclease L-PSP family protein
contains Pfam domain PF01042: Endoribonuclease L-PSP
Length = 187
Score = 125 bits (301), Expect = 3e-29
Identities = 62/128 (48%), Positives = 88/128 (68%), Gaps = 1/128 (0%)
Frame = +3
Query: 3 NAHRVVKTIVTSPDVYKPVGPYSQAILSDKTLYISGVLGM-DRDAQLVSGGVGAQTRQVL 179
+A V K +V++ +GPYSQAI ++ +++SGVLG+ + VS V QT QVL
Sbjct: 58 SASSVKKEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQVL 117
Query: 180 ENLKHVVEAGGGSLESVIKTTILLANMDDFQCVNQIYAEYFPKNCPARATYQVTKLPLNA 359
+N+ +++A G SV+KTTI+LA++ DF+ VN+IYA+YFP PAR+TYQV LPLNA
Sbjct: 118 KNMGEILKASGADYSSVVKTTIMLADLADFKTVNEIYAKYFPAPSPARSTYQVAALPLNA 177
Query: 360 AVEIEAIA 383
+EIE IA
Sbjct: 178 KIEIECIA 185
>At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein
contains Pfam domain PF01902: Domain of unknown function
Length = 715
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 57 VGPYSQAILSDKTLYISGVLGMDRDA-QLVSGGVGAQTRQVLENLKHVVEAGGGSLES 227
+GPYSQA L L+++G LG+D L + G A+ Q L N + + E+ S+ S
Sbjct: 425 IGPYSQATLHQSVLHMAGQLGLDPPTMNLQTEGAIAELNQALTNSEAIAESFNCSISS 482
>At4g35890.1 68417.m05097 La domain-containing protein contains Pfam
PF05383: La domain
Length = 523
Score = 28.7 bits (61), Expect = 3.3
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = -3
Query: 418 GPASVMTRSPLRAIASISTAAFRGSLVT 335
GP+S +R+P+ IAS+S AA +++T
Sbjct: 64 GPSSPQSRAPIEPIASVSVAAPTAAVLT 91
>At4g18150.1 68417.m02697 hypothetical protein
Length = 762
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/51 (29%), Positives = 31/51 (60%)
Frame = +3
Query: 144 SGGVGAQTRQVLENLKHVVEAGGGSLESVIKTTILLANMDDFQCVNQIYAE 296
+GGV A +R+V+++LK +VE E I ++ +M+ + VN++ ++
Sbjct: 12 NGGVPASSRKVIQDLKEIVECS----ELEIYAMLVECDMNPDEAVNRLLSQ 58
>At3g05480.1 68416.m00600 cell cycle checkpoint control protein
family contains Pfam profile PF04139: Rad9; contains
Prosite PS00976: Myristoyl-CoA:protein
N-myristoyltransferase signature 2; similar to
radio-resistance/chemo-resistance/cell cycle checkpoint
control protein (GI:3869274) [Mus musculus]
Length = 439
Score = 28.7 bits (61), Expect = 3.3
Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 10/67 (14%)
Frame = -1
Query: 204 PQLHASSFLKLGASVL--PLHQIP-----TAHHDPCRV---LPIYRESCQIKWLDCRVQP 55
PQ H S LK SVL PL I HD +V L Y + W+ C V+P
Sbjct: 66 PQAHFSVLLKAVCSVLRTPLASIDHMSVQLPDHDASKVKWTLQCYSGMKKTYWITCNVEP 125
Query: 54 VYRHLGM 34
+HL +
Sbjct: 126 DIQHLSL 132
>At1g34060.1 68414.m04222 alliinase family protein contains Pfam
profiles: PF04864 allinase C-terminal domain, PF04863
alliinase EGF-like domain
Length = 463
Score = 28.3 bits (60), Expect = 4.3
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = +3
Query: 66 YSQAILSDKTLYISGVLGMDRDAQLVSGGVGAQTR-QVLENLKHVVEAGGGSLES 227
+ ++ DK +Y MDR +L S GV +T+ VL+ LK VV GG + S
Sbjct: 294 FGWGLVKDKAIYEK----MDRFIRLTSMGVSKETQLHVLQLLKVVVGDGGNEIFS 344
>At5g52480.1 68418.m06511 leucine-rich repeat protein, N7-related
contains PF00560: Leucine Rich Repeat; similar to F-box
protein Fbl2 (GI:6164721) [Homo sapiens]
Length = 241
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 336 VTKLPLNAAVEIEAIALSGDLVITEAGPCPCART*YINIL 455
V KLP+ +E+ I+LSG+ + CP +T +N L
Sbjct: 73 VVKLPMLEELEVSGISLSGESMKLAGLSCPNLKTLMLNRL 112
>At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -related
similar to CLIP-associating protein CLASP2 (GI:13508651)
[Rattus norvegicus]
Length = 1439
Score = 27.9 bits (59), Expect = 5.7
Identities = 16/46 (34%), Positives = 26/46 (56%)
Frame = +3
Query: 105 SGVLGMDRDAQLVSGGVGAQTRQVLENLKHVVEAGGGSLESVIKTT 242
S ++ MDR + L SGG + +L K V + SLESV++++
Sbjct: 540 SAIVAMDRSSNLSSGG-SLSSGLLLSQSKDVNKGSERSLESVLQSS 584
>At2g40113.1 68415.m04932 hypothetical protein
Length = 144
Score = 27.5 bits (58), Expect = 7.5
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -1
Query: 216 IHLPPQLHASSFLKLGASVLPLHQIPTAHH 127
IHLP LHA L+ V P+H +P +H
Sbjct: 66 IHLPSHLHAIPQLEKACFVKPIH-VPKHYH 94
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,561,851
Number of Sequences: 28952
Number of extensions: 286776
Number of successful extensions: 700
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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