Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_E06
         (604 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30797| Best HMM Match : Notch (HMM E-Value=2.4e-07)                 30   1.3  
SB_46459| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_43678| Best HMM Match : Ribonuclease_BN (HMM E-Value=0.81)          28   5.1  
SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0)                28   5.1  
SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_345| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   8.8  
SB_34495| Best HMM Match : Ets (HMM E-Value=0)                         27   8.8  

>SB_30797| Best HMM Match : Notch (HMM E-Value=2.4e-07)
          Length = 778

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 3/70 (4%)
 Frame = +2

Query: 143 LFNKT-HRANAEIIMLDGLTSVYKSNVDLFF-YVIGSSHENELILQSVLNA-LYESVSML 313
           L +KT HR N E I+ +G+ SVY +   +F   +  + H  E I+++ + A  ++ +++ 
Sbjct: 101 LHSKTLHRNNQEFILPNGIKSVYFNMSKIFSGKITDADHNKERIIRTAIVAQKHKLLTLT 160

Query: 314 LRRNVERRIL 343
            R N  + +L
Sbjct: 161 FRGNFSQTLL 170


>SB_46459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/76 (23%), Positives = 37/76 (48%)
 Frame = +2

Query: 203 VYKSNVDLFFYVIGSSHENELILQSVLNALYESVSMLLRRNVERRILFDNLDAVMLVFDE 382
           VY+    L+F     S E+EL +  ++    E++        E  ++F ++D V  +  E
Sbjct: 38  VYRHYATLYFVFCVDSSESELGILDLIQVFVETLDKCFENVCELDLIF-HMDKVHHILAE 96

Query: 383 ICDRGVILDADPTSIV 430
           I   G++L+ + + I+
Sbjct: 97  IVMGGMVLETNMSEIL 112


>SB_43678| Best HMM Match : Ribonuclease_BN (HMM E-Value=0.81)
          Length = 468

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 26/85 (30%), Positives = 38/85 (44%)
 Frame = -2

Query: 489 TWATVCSPSGTSSVLRAARATMDVGSASRITPLSHISSKTSITASRLSKSIRLSTFLRRS 310
           TW      S T  V  ++  T DV   S +T +  ISS   I+   LS S+ L   +  S
Sbjct: 43  TWVIKFISSLTRLVTYSSNVTRDVTVISIVTSIFRISSSV-ISVFTLSFSVTLVVTVISS 101

Query: 309 ILTDS*SALSTDCRINSFSCELPMT 235
           ++  + S+  T     SFS  L +T
Sbjct: 102 VIVVTISSSVTSVVKVSFSVTLVVT 126


>SB_8676| Best HMM Match : Peptidase_M18 (HMM E-Value=0)
          Length = 1161

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +2

Query: 353 LDAVMLVFDEICDRGVILDADPTSIVARAALRTEDVPLGEQTVAQVLQSAKEQLK 517
           + AVM+ FD +  +G+I   D          +TE +  GE  +A V +    QL+
Sbjct: 276 IPAVMVNFDNLISKGIITKTDDFKQFVNKNSKTEVILAGEPELASVKKGDVIQLQ 330


>SB_30234| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5222

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 537  NYFSNDHFSCSFADCRTWATVCSPSGT 457
            +Y ++DHFSC      +   +C PSGT
Sbjct: 1665 SYNNSDHFSCPIYSVNSTGAIC-PSGT 1690


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = -2

Query: 489  TWATVCSPSGTSSVLRAARATMDVGSASRITP--LSHISSKTSITASRLS-KSIRLSTFL 319
            T +   S    SSV+ +A  T  V S++++TP   S   + TS+T S     S+  ST +
Sbjct: 1843 TPSVASSTQAASSVILSAEVTTSVTSSTQVTPSVASSTQAATSVTPSTQGMPSVAPSTQM 1902

Query: 318  RRSILTDS 295
              S+ + +
Sbjct: 1903 TPSVASST 1910


>SB_345| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1213

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/64 (23%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +2

Query: 158 HRANAEIIMLDGLTSVYKSNVDLFF-YVIGSSHENELILQSVLNA-LYESVSMLLRRNVE 331
           HR N E I+ +G+ SVY +   +F   +  + H  E ++++ + A  ++ +++  R N  
Sbjct: 514 HRNNQEFILPNGIKSVYFNMSKIFSGKITDADHNKERVIRTAIVAQKHKLLTLTFRGNFS 573

Query: 332 RRIL 343
           + ++
Sbjct: 574 QTLV 577


>SB_34495| Best HMM Match : Ets (HMM E-Value=0)
          Length = 476

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 22/77 (28%), Positives = 32/77 (41%)
 Frame = +2

Query: 284 NALYESVSMLLRRNVERRILFDNLDAVMLVFDEICDRGVILDADPTSIVARAALRTEDVP 463
           N  YE +S  LR   ++ I+ D +     V+  +CD   IL  DPT       ++ ED  
Sbjct: 285 NMNYEKLSRGLRYYYDKNII-DKVHGKRYVYQFVCDIEKILGYDPTE-QKLDGVKVEDAV 342

Query: 464 LGEQTVAQVLQSAKEQL 514
            G +    V      QL
Sbjct: 343 CGMEYTEGVSSCESVQL 359


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,032,149
Number of Sequences: 59808
Number of extensions: 344436
Number of successful extensions: 1024
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)