Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0006_D03
         (393 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22145| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.3  
SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)                    27   5.4  
SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)                  27   7.2  
SB_46248| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  
SB_21097| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  
SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)                26   9.5  

>SB_22145| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -3

Query: 199 KSPCH-VSCAYHNMVIPDSHLDR 134
           K PC    C  H+MVIPD +LD+
Sbjct: 47  KRPCSDAGCHRHSMVIPDPYLDQ 69


>SB_871| Best HMM Match : 7tm_1 (HMM E-Value=0.0017)
          Length = 1675

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 372 GPHGSAPASLESVHYVRPTFSVRIGS 295
           GP  S P  + ++H +    S+RIGS
Sbjct: 585 GPSSSTPIDISTIHKILRPHSIRIGS 610


>SB_45246| Best HMM Match : zf-MYND (HMM E-Value=0.19)
          Length = 1828

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
 Frame = +3

Query: 36  SVMDPAVSTPTRGEIRGQTC-WK 101
           S +D +V+ P +G IRG TC WK
Sbjct: 87  SRIDTSVAYPQKGIIRGSTCTWK 109


>SB_46248| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 305

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = -3

Query: 331 LCSANF*CPDRISST 287
           LCSA + CPD++SST
Sbjct: 177 LCSAAWTCPDQVSST 191


>SB_21097| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 188

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -3

Query: 214 MLP-STKSPCHVSCAYHNMVIPDSHLDRIVLIHRVITERFQQV 89
           MLP  T SP      YHN +   S + R +L+  + ++RF  V
Sbjct: 1   MLPVPTSSPLRPLLKYHNSIEQQSDIGRYLLMDDLRSKRFSCV 43


>SB_15491| Best HMM Match : zf-C3HC4 (HMM E-Value=0.079)
          Length = 689

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 226 NQLSMLPSTKSPCHVSCAY 170
           ++L +LP  K PCH  C +
Sbjct: 192 DELELLPCCKQPCHYPCLW 210


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,741,458
Number of Sequences: 59808
Number of extensions: 280192
Number of successful extensions: 633
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 678472135
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)