Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J11
         (501 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55916| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)                     28   5.0  
SB_37511| Best HMM Match : ABC_tran (HMM E-Value=0)                    27   8.7  

>SB_55916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 191 ECSVRPVKAYIMSDLLKRFDYETTNDFVQIAISIAGF 301
           + S  P K Y+MS  LKRF ++    +V +   + GF
Sbjct: 179 QMSFAPKKCYVMSITLKRFPFKVPTHYVVLFWKVCGF 215


>SB_7742| Best HMM Match : HEAT (HMM E-Value=9e-23)
          Length = 940

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/35 (48%), Positives = 21/35 (60%)
 Frame = +2

Query: 176 AMVKTECSVRPVKAYIMSDLLKRFDYETTNDFVQI 280
           A  K E +VR + AYI SDLLK    E  +D +QI
Sbjct: 771 AKFKGEAAVRQMWAYICSDLLKAVRSEPDSD-IQI 804


>SB_37511| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 884

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 329 VDTEYSLWLTWFLTPVIVTFL 391
           VDT Y  WL+WFLT  IV  +
Sbjct: 295 VDTAY--WLSWFLTYAIVVLI 313


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,719,479
Number of Sequences: 59808
Number of extensions: 264714
Number of successful extensions: 504
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 504
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)