Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J11
         (501 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g50800.1 68418.m06293 nodulin MtN3 family protein similar to ...    27   5.4  
At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contai...    27   7.1  
At1g79580.3 68414.m09279 no apical meristem (NAM) family protein...    27   9.4  
At1g79580.2 68414.m09278 no apical meristem (NAM) family protein...    27   9.4  
At1g79580.1 68414.m09277 no apical meristem (NAM) family protein...    27   9.4  

>At5g50800.1 68418.m06293 nodulin MtN3 family protein similar to
           MtN3 GI:1619602 (root nodule development) from [Medicago
           truncatula]
          Length = 294

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 307 WTFLFGICGHRVQFVADLVP 366
           W F+FGI G+ + FV  L P
Sbjct: 8   WAFVFGILGNIISFVVFLAP 27


>At3g61740.1 68416.m06923 PHD finger family protein (ATX3) contains
           Pfam domains PF00628: PHD-finger and PF00855: PWWP
           domain; identical to cDNA trithorax 3 (ATX3) partial cds
           GI:15217142
          Length = 799

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = -3

Query: 373 RRQEPGQPQTVLCVHIFQIKKSNVETG 293
           +R +  QP+ +LC H  +++KSN   G
Sbjct: 326 KRTKDSQPEELLCKHCSKLRKSNQYCG 352


>At1g79580.3 68414.m09279 no apical meristem (NAM) family protein
           similar to OsNAC7 protein  (GI:6730944) [Oryza sativa];
           contains weak hit to Pfam PF02365 : No apical meristem
           (NAM) protein
          Length = 371

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 388 PTSSSHYHPHIFKQYHLPL 444
           P    H+H HI +Q H+PL
Sbjct: 214 PLDHHHHHHHIGRQIHMPL 232


>At1g79580.2 68414.m09278 no apical meristem (NAM) family protein
           similar to OsNAC7 protein  (GI:6730944) [Oryza sativa];
           contains weak hit to Pfam PF02365 : No apical meristem
           (NAM) protein
          Length = 371

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 388 PTSSSHYHPHIFKQYHLPL 444
           P    H+H HI +Q H+PL
Sbjct: 214 PLDHHHHHHHIGRQIHMPL 232


>At1g79580.1 68414.m09277 no apical meristem (NAM) family protein
           similar to OsNAC7 protein  (GI:6730944) [Oryza sativa];
           contains weak hit to Pfam PF02365 : No apical meristem
           (NAM) protein
          Length = 371

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 388 PTSSSHYHPHIFKQYHLPL 444
           P    H+H HI +Q H+PL
Sbjct: 214 PLDHHHHHHHIGRQIHMPL 232


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,379,821
Number of Sequences: 28952
Number of extensions: 176295
Number of successful extensions: 326
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)