Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J10
         (283 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)        29   0.76 
SB_3857| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   2.3  
SB_52939| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.4  
SB_16663| Best HMM Match : Keratin_B2 (HMM E-Value=0.61)               25   9.4  
SB_57281| Best HMM Match : Keratin_B2 (HMM E-Value=1.1)                25   9.4  

>SB_15022| Best HMM Match : Zona_pellucida (HMM E-Value=5.6e-38)
          Length = 525

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = +3

Query: 48  CSTILCQPTGGRARLTEGCSFRRKQ 122
           C  ++CQ +  ++R T+GC ++R++
Sbjct: 230 CEVLVCQRSDKKSRCTKGCPYQRRR 254


>SB_3857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 285

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +1

Query: 73  LVAELD*RKDVHLEENSIKSWRESRINFKIMFVSNNM 183
           L +E+  RK+V +   ++  W  S   +  + VSNNM
Sbjct: 198 LDSEMAERKEVTVYTTALSQWLSSMFTYPFVVVSNNM 234


>SB_52939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/16 (56%), Positives = 15/16 (93%)
 Frame = -3

Query: 197 KRHSFILLETNIILKL 150
           KRH+F+L+E+NI+ +L
Sbjct: 8   KRHAFMLMESNILHEL 23


>SB_16663| Best HMM Match : Keratin_B2 (HMM E-Value=0.61)
          Length = 385

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 27  RVVVCAGCSTILCQPTGGRARLTEGC 104
           RVVV +GC    C     R  +T GC
Sbjct: 269 RVVVTSGCHQWFCHEWLSRVVVTSGC 294


>SB_57281| Best HMM Match : Keratin_B2 (HMM E-Value=1.1)
          Length = 319

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +3

Query: 27  RVVVCAGCSTILCQPTGGRARLTEGC 104
           RVVV +GC    C     R  +T GC
Sbjct: 203 RVVVTSGCHQWFCHEWLSRVVVTSGC 228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,825,045
Number of Sequences: 59808
Number of extensions: 124960
Number of successful extensions: 265
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 16,821,457
effective HSP length: 70
effective length of database: 12,634,897
effective search space used: 290602631
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)