Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J09
         (573 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)              249   1e-66
SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)                   37   0.010
SB_54546| Best HMM Match : zf-CCHC (HMM E-Value=0.0024)                29   2.7  
SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)                      29   3.6  
SB_48231| Best HMM Match : TUDOR (HMM E-Value=1.9e-28)                 28   4.7  
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)                     28   4.7  
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)                      28   6.2  
SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)                     28   6.2  

>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
          Length = 212

 Score =  249 bits (609), Expect = 1e-66
 Identities = 115/151 (76%), Positives = 130/151 (86%)
 Frame = +2

Query: 119 EVDADLLGDEWKGYVLRVAGGNDKQGFPMKQGVLTNSRVRLLMSKGHSCYRPRRDGERKR 298
           EV  + LGDEWKGYV R+ GGNDKQGFPMKQG++TN RVRLL+SKGHSCYRPRR GERKR
Sbjct: 2   EVSGECLGDEWKGYVFRITGGNDKQGFPMKQGIMTNGRVRLLLSKGHSCYRPRRTGERKR 61

Query: 299 KSVRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVR 478
           KSVRGCIVD+ LSVL+LVIV+KG Q+IPGLTD  +PRRLGPKR  KIRK+FNL KEDDVR
Sbjct: 62  KSVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNTIPRRLGPKRVGKIRKMFNLSKEDDVR 121

Query: 479 RYVVKRLLPAKEGKDNAKPRYKAPKIQRLVT 571
           +YV++R LP KEGK   K + KAPKIQRLVT
Sbjct: 122 QYVIRRPLPEKEGK---KAKSKAPKIQRLVT 149


>SB_47786| Best HMM Match : Ank (HMM E-Value=4.4e-30)
          Length = 796

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = -3

Query: 265 ARVAF*HQETYTAVSQDSLFHREALLVVTAGNTENITFPFVA*KICINFSAHTLFIE 95
           A V    QE   A+  D L H ++L V+T  + E+++ P +   +      HTL IE
Sbjct: 250 AAVTLGEQEADAAIGHDPLLHGKSLFVITTSDPEDVSLPLIPQALPRYLHGHTLVIE 306


>SB_54546| Best HMM Match : zf-CCHC (HMM E-Value=0.0024)
          Length = 848

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 13/36 (36%), Positives = 25/36 (69%)
 Frame = +3

Query: 222 LTAVYVS*CQKATLATDHVVTVRGNASLFVVALLML 329
           L+++  + C KATLA D+V++ +GN+   ++  L+L
Sbjct: 472 LSSMLSNGCTKATLACDNVISEKGNSFQRILGSLIL 507


>SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)
          Length = 172

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 305 VRGCIVDANLSVLALVIVRKGAQEIPGLTDGEVPRRLGPKRASKIRK 445
           VR C +D   +VLA  +  + A E  GLT+G V    GP R   +++
Sbjct: 86  VRSCPMDKQSTVLA--VETREACESKGLTEGCVSSAFGPGREEPVQE 130


>SB_48231| Best HMM Match : TUDOR (HMM E-Value=1.9e-28)
          Length = 1282

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 7/53 (13%)
 Frame = +2

Query: 392  DGEVPRRLGPKRAS-------KIRKLFNLKKEDDVRRYVVKRLLPAKEGKDNA 529
            D ++PRR+  +R +       K RK+F+L     +   + KRLLP   G++ A
Sbjct: 1206 DKDIPRRIKQERQNNRYTDHRKFRKVFSLPSRLKIPANLAKRLLPPPPGRNVA 1258


>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
          Length = 291

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 395 GEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVK 493
           G    + GP + SKI K+    ++DDV+  VVK
Sbjct: 221 GSEAAKTGPNKLSKIDKVILAVEDDDVQEIVVK 253


>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 2411

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 2/21 (9%)
 Frame = +1

Query: 472 CASLCCKTPFTCQ--RGQGQC 528
           CASL CK+P  CQ  +G+ QC
Sbjct: 122 CASLRCKSPSRCQVIKGKPQC 142


>SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)
          Length = 1101

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +2

Query: 377 IPGLTDGEVPRRLGPKRASKIRKLFNLKKEDDVRRYVVKRLLPAKEGKDNAKPR 538
           +  + D E P  L    A  ++ + +    DDV+  ++K L+P KEG ++  P+
Sbjct: 9   LDSMRDKEAPAVL----AGLVQNILDEDIPDDVKHRLLKPLVPEKEGPESLDPK 58


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,198,232
Number of Sequences: 59808
Number of extensions: 388644
Number of successful extensions: 1039
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)