Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J08
         (487 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.29 
SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)          31   0.38 
SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.50 
SB_59600| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.5e-05)           29   2.0  
SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)         29   2.0  
SB_7240| Best HMM Match : OMPdecase (HMM E-Value=0)                    28   4.7  
SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)              27   6.2  
SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)                 27   8.2  
SB_20479| Best HMM Match : Collagen (HMM E-Value=1)                    27   8.2  

>SB_29525| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 511

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = +3

Query: 246 ALDFYQTALRDPAFYQLYDRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFD 425
           AL +   ALR P   ++Y   +  ++ FK  LK YP    H   +       + L+ + D
Sbjct: 180 ALRYVLDALRKPYGSKMYMFGIAALDRFKTRLKDYPHYCQHLASIPHFKEFPQSLIEYID 239

Query: 426 YSQ 434
           Y Q
Sbjct: 240 YGQ 242


>SB_43557| Best HMM Match : Pentapeptide (HMM E-Value=8.1e-11)
          Length = 129

 Score = 31.5 bits (68), Expect = 0.38
 Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = +1

Query: 208 HLNHSTSTPSCPVRLTFTKPHFETLHSISYMTGLWVTLTHSSIT*SLILKRNFISSALKS 387
           +L HST T S    L  T     T  +++++T  + TLTH +IT S I         L  
Sbjct: 26  NLTHSTLTHSNLTHLNLTHSTL-TYSTLTHLTLTYSTLTHLTITYSTITHSTLTHLTLTH 84

Query: 388 MMLSLRN*SHS-LTIANLMPLTV 453
           + L+    +HS LT + L   T+
Sbjct: 85  LTLTYSTLTHSTLTHSTLTHSTL 107



 Score = 29.5 bits (63), Expect = 1.5
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
 Frame = +1

Query: 286 SISYMTGLWVTLTHSSIT*SLILKRNFISSALKSMMLSLRN*SHS-LTIANLMPLTV 453
           ++++ T + +TLTHS++T   +   N   S L    L+  N +HS LT + L  LT+
Sbjct: 1   TLTHPTLIHLTLTHSNLTHLTLTHSNLTHSTLTHSNLTHLNLTHSTLTYSTLTHLTL 57



 Score = 29.5 bits (63), Expect = 1.5
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = +1

Query: 172 LMKLSLAMCSVQHLN--HSTSTPSCPVRLTFTKPHFETLHSISYMTGLWVTLTHSSIT*S 345
           L  L+L   ++ HL   +ST T S    LT T  H     +++Y T    TLTHS++T S
Sbjct: 52  LTHLTLTYSTLTHLTITYSTITHSTLTHLTLT--HL----TLTYSTLTHSTLTHSTLTHS 105

Query: 346 LILKRNFISSALKSMMLSLRN*SH 417
            +       S +    L+  N +H
Sbjct: 106 TLTHSTLTHSTITHSTLTHSNLTH 129



 Score = 29.1 bits (62), Expect = 2.0
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
 Frame = +1

Query: 175 MKLSLAMCSVQHLNHSTSTPSCPVRLTFTKP---HFETLH-SISYMTGLWVTLTHSSIT* 342
           + L+ +  +   L H T T S    LT T     H    H +++++T  + TLTHS++T 
Sbjct: 40  LNLTHSTLTYSTLTHLTLTYSTLTHLTITYSTITHSTLTHLTLTHLTLTYSTLTHSTLTH 99

Query: 343 SLILKRNFISSALKSMMLSLRN*SHS 420
           S +       S L    ++    +HS
Sbjct: 100 STLTHSTLTHSTLTHSTITHSTLTHS 125


>SB_20225| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1548

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +1

Query: 187  LAMCSVQHLNHSTSTPSCPVRLTFTKPHFET 279
            L+ CS+Q L  +T T   P+R++F++PH  T
Sbjct: 1421 LSTCSLQSLTDNT-TSERPIRISFSEPHLHT 1450


>SB_59600| Best HMM Match : DNA_pol_B_2 (HMM E-Value=1.5e-05)
          Length = 1119

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 189 RHVLGAAPKPFDKHTFMPSALDFYQTALRDPAFYQLYDRIVGYINAF 329
           R +L   P P ++  ++P   DF+  +L D   +   D +  YIN +
Sbjct: 20  RRLLEVLPDPIEEDNYLPP--DFFYDSLADSPQFASLDELFNYINYY 64


>SB_32707| Best HMM Match : Peptidase_A17 (HMM E-Value=4.8e-22)
          Length = 2269

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 7/51 (13%)
 Frame = +3

Query: 36   LQKGKFE-----SYGKKIDFHDEKAINFVGNYWQENADL--YEEEVTKDYQ 167
            L+KGKF+     S  K ID   E+   F+G+ W ++ DL  +++E  K+ Q
Sbjct: 1093 LEKGKFQVKQWCSNSKTIDKSCERYCTFLGHKWDKDRDLLTFKKEKIKETQ 1143


>SB_7240| Best HMM Match : OMPdecase (HMM E-Value=0)
          Length = 474

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +3

Query: 363 LHFVGVKINDVVVEKLVTFFDYSQFDATNSV 455
           LH  G K++D VVE +  F + +QF AT+ V
Sbjct: 181 LHAQG-KVDDAVVESVREFLEANQFKATSDV 210


>SB_1853| Best HMM Match : RVT_1 (HMM E-Value=5.99994e-41)
          Length = 1069

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 51  FESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQRSYEIVAR 191
           FE Y    ++ DEKA  ++  Y ++ A  +  E     +RSY  + +
Sbjct: 138 FEIYVSLNEWQDEKAGQYLAVYLKDEAKAFYHEQEDSVRRSYRALCK 184


>SB_58934| Best HMM Match : TPR_1 (HMM E-Value=3.8e-37)
          Length = 1632

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +1

Query: 16   KRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDLMKLSLAM 195
            K + YS   K  ++  AR   S ++  +   + + KR     KKK++R  N  MKL+  +
Sbjct: 893  KFVDYSEKAKLRASAQARNSRSPVEVAIEEEKRVAKRKKEQRKKKVRRRKNAAMKLANKL 952

Query: 196  CS 201
             S
Sbjct: 953  VS 954


>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
          Length = 1214

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +3

Query: 33  SLQKGKFESYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDYQR 170
           +LQ+G   S   K+++    A+   G+  Q++ ++ E E  +DYQR
Sbjct: 499 NLQRGYIASNQDKLEWKVFFAMGKTGDNSQDSRNIREAEEQRDYQR 544


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,555,931
Number of Sequences: 59808
Number of extensions: 296142
Number of successful extensions: 952
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)