Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_J08
(487 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical pr... 31 0.59
AC084158-23|AAP31422.1| 187|Caenorhabditis elegans Hypothetical... 30 1.0
AC084158-22|AAM15623.1| 214|Caenorhabditis elegans Hypothetical... 30 1.0
AC084158-21|AAK68581.1| 271|Caenorhabditis elegans Hypothetical... 30 1.0
AF273836-1|AAG15184.1| 362|Caenorhabditis elegans nuclear recep... 29 2.4
AC024776-15|AAK68482.2| 354|Caenorhabditis elegans Nuclear horm... 29 2.4
U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore co... 28 3.1
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co... 28 3.1
U41554-3|AAA83298.2| 745|Caenorhabditis elegans Nematode astaci... 28 4.1
Z99267-1|CAB16465.1| 732|Caenorhabditis elegans C33A12.12 protein. 27 5.5
Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical pr... 27 5.5
Z68493-14|CAA92801.1| 732|Caenorhabditis elegans Hypothetical p... 27 5.5
X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy ch... 27 5.5
AL033537-1|CAA22147.1| 732|Caenorhabditis elegans Hypothetical ... 27 5.5
Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z83102-2|CAB05464.1| 349|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z81553-6|CAB04495.1| 388|Caenorhabditis elegans Hypothetical pr... 27 9.5
AF024494-13|AAB70328.1| 398|Caenorhabditis elegans Nuclear horm... 27 9.5
>Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical
protein F46F3.4 protein.
Length = 769
Score = 30.7 bits (66), Expect = 0.59
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 145 KKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHSISYMT 303
K+ Q+ ++L K++ H + STS+ P +TF+ P FE + S MT
Sbjct: 325 KENQQKYSELSKMASTDPHSNHSSPSTSSQKAPTLITFSPPSFEQKINSSTMT 377
>AC084158-23|AAP31422.1| 187|Caenorhabditis elegans Hypothetical
protein Y69A2AR.7c protein.
Length = 187
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 139 MKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 288
++K QR+ +D+ + L +C +H+NH+ TP P + T FET S
Sbjct: 104 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 150
>AC084158-22|AAM15623.1| 214|Caenorhabditis elegans Hypothetical
protein Y69A2AR.7b protein.
Length = 214
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 139 MKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 288
++K QR+ +D+ + L +C +H+NH+ TP P + T FET S
Sbjct: 131 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 177
>AC084158-21|AAK68581.1| 271|Caenorhabditis elegans Hypothetical
protein Y69A2AR.7a protein.
Length = 271
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +1
Query: 139 MKKKLQRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 288
++K QR+ +D+ + L +C +H+NH+ TP P + T FET S
Sbjct: 177 LQKMRQRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 223
>AF273836-1|AAG15184.1| 362|Caenorhabditis elegans nuclear receptor
NHR-92 protein.
Length = 362
Score = 28.7 bits (61), Expect = 2.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 84 RGNQFSCHTIRICLSVGTVRKSFQKC 7
RG+++ C + CL V T+R +KC
Sbjct: 43 RGHEYRCKQMENCLIVSTIRNMCKKC 68
>AC024776-15|AAK68482.2| 354|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 92 protein.
Length = 354
Score = 28.7 bits (61), Expect = 2.4
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -2
Query: 84 RGNQFSCHTIRICLSVGTVRKSFQKC 7
RG+++ C + CL V T+R +KC
Sbjct: 35 RGHEYRCKQMENCLIVSTIRNMCKKC 60
>U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform b protein.
Length = 889
Score = 28.3 bits (60), Expect = 3.1
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 214 NHSTSTPSCPVRLTFTKPHFETLHSISYMT--GLWVTLTHSSIT 339
+HS STP P+R + T H + ++ISY T G V +T S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230
>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform a protein.
Length = 1562
Score = 28.3 bits (60), Expect = 3.1
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 214 NHSTSTPSCPVRLTFTKPHFETLHSISYMT--GLWVTLTHSSIT 339
+HS STP P+R + T H + ++ISY T G V +T S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230
>U41554-3|AAA83298.2| 745|Caenorhabditis elegans Nematode astacin
protease protein38 protein.
Length = 745
Score = 27.9 bits (59), Expect = 4.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +3
Query: 81 HDEKAINFVGNYWQENADLYEEEV 152
HDE A+N Y+Q + DL E++V
Sbjct: 75 HDELAVNNADEYFQGDVDLSEQQV 98
>Z99267-1|CAB16465.1| 732|Caenorhabditis elegans C33A12.12 protein.
Length = 732
Score = 27.5 bits (58), Expect = 5.5
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = +3
Query: 270 LRDPAFYQLYDRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATN 449
LR ++L D ++ Y N +HY P+ HF IN ++ FDY + T
Sbjct: 385 LRSFEIFRLLDYLLNYCNELQHY---SPEINEHFWTSIIN--LISLGACQFDYDKICLTV 439
Query: 450 SVFLTKKE 473
+LTK +
Sbjct: 440 LKYLTKSK 447
>Z78199-1|CAB01576.2| 1969|Caenorhabditis elegans Hypothetical protein
K12F2.1 protein.
Length = 1969
Score = 27.5 bits (58), Expect = 5.5
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 16 KRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDL 174
KR+ N+ R ++ + +M+ L +ET K + +KKKL+ INDL
Sbjct: 1587 KRIQEKEEEFENTRRNHQRALESMQATLE-AETKQKEEALRIKKKLESDINDL 1638
>Z68493-14|CAA92801.1| 732|Caenorhabditis elegans Hypothetical
protein C33A12.12 protein.
Length = 732
Score = 27.5 bits (58), Expect = 5.5
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = +3
Query: 270 LRDPAFYQLYDRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATN 449
LR ++L D ++ Y N +HY P+ HF IN ++ FDY + T
Sbjct: 385 LRSFEIFRLLDYLLNYCNELQHY---SPEINEHFWTSIIN--LISLGACQFDYDKICLTV 439
Query: 450 SVFLTKKE 473
+LTK +
Sbjct: 440 LKYLTKSK 447
>X08067-1|CAA30856.1| 1969|Caenorhabditis elegans myosin heavy chain 3
protein.
Length = 1969
Score = 27.5 bits (58), Expect = 5.5
Identities = 17/53 (32%), Positives = 28/53 (52%)
Frame = +1
Query: 16 KRLSYSPYRKANSNRMARKLISTMKRQLTLSETIGKRTPICMKKKLQRIINDL 174
KR+ N+ R ++ + +M+ L +ET K + +KKKL+ INDL
Sbjct: 1587 KRIQEKEEEFENTRRNHQRALESMQATLE-AETKQKEEALRIKKKLESDINDL 1638
>AL033537-1|CAA22147.1| 732|Caenorhabditis elegans Hypothetical
protein C33A12.12 protein.
Length = 732
Score = 27.5 bits (58), Expect = 5.5
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = +3
Query: 270 LRDPAFYQLYDRIVGYINAFKHYLKPYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATN 449
LR ++L D ++ Y N +HY P+ HF IN ++ FDY + T
Sbjct: 385 LRSFEIFRLLDYLLNYCNELQHY---SPEINEHFWTSIIN--LISLGACQFDYDKICLTV 439
Query: 450 SVFLTKKE 473
+LTK +
Sbjct: 440 LKYLTKSK 447
>Z81541-1|CAB04411.1| 1291|Caenorhabditis elegans Hypothetical
protein F48F5.1 protein.
Length = 1291
Score = 27.1 bits (57), Expect = 7.2
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = +1
Query: 55 NRMARKLISTMKRQLTLSETIG--KRTPICMKKKLQRIINDLMKLSLAMCSVQHLNHSTS 228
+++ + T K SET+ K+ P MKK ++ + +L K S ++ ++HS S
Sbjct: 498 DKLLESVQQTAKSVSQFSETLASVKKIPDAMKKNVKNVTLELNKRSESLNQSDAISHSAS 557
>Z83102-2|CAB05464.1| 349|Caenorhabditis elegans Hypothetical
protein C54C8.2 protein.
Length = 349
Score = 26.6 bits (56), Expect = 9.5
Identities = 8/17 (47%), Positives = 14/17 (82%)
Frame = +3
Query: 57 SYGKKIDFHDEKAINFV 107
S+G +DFH +KA+N++
Sbjct: 53 SFGLFVDFHSQKALNYI 69
>Z81553-6|CAB04495.1| 388|Caenorhabditis elegans Hypothetical
protein F56H6.6 protein.
Length = 388
Score = 26.6 bits (56), Expect = 9.5
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +3
Query: 57 SYGKKIDFHDEKAINFVGNYWQENADLYEEEVTKDY 164
S+G +D+H +KA+ +V Q + + + E+VT Y
Sbjct: 92 SFGMFVDYHSQKALEYVAMLHQCDKE-FGEKVTVHY 126
>AF024494-13|AAB70328.1| 398|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 260 protein.
Length = 398
Score = 26.6 bits (56), Expect = 9.5
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Frame = -3
Query: 413 D*FLNDNIIDFNADEMKFLLRIRLQVMLECVNVTHNPVI*L----IECRVSKCGLVKV-- 252
D F N+ + N + MK ++ + E +N P L +EC K L+
Sbjct: 256 DYFFGLNVTNVNMESMKLKTQLHHNFVTEMINCLGTPFRRLQIDDVECAALKIILLLTPS 315
Query: 251 --KRT---GHEGVLVEWFRCCTEHM 192
KR G EGVL + CTE +
Sbjct: 316 CTKRAIYAGQEGVLAGLYTKCTEEL 340
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,993,580
Number of Sequences: 27780
Number of extensions: 230272
Number of successful extensions: 758
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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