Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J04
         (677 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54471| Best HMM Match : PHD (HMM E-Value=4.9e-08)                   30   1.5  
SB_48410| Best HMM Match : Lig_chan (HMM E-Value=3.5e-05)              30   2.0  
SB_46123| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)            29   4.6  
SB_44560| Best HMM Match : DUF1086 (HMM E-Value=1.2)                   28   6.0  
SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)                28   8.0  

>SB_54471| Best HMM Match : PHD (HMM E-Value=4.9e-08)
          Length = 352

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 128 ESCQIKWLDCRVQPVYRHLGMLQWSSPLCEHLL 30
           +SC+I+WL      + +  G  +W  P CE LL
Sbjct: 316 QSCEIEWLHIECDGLRQVPGEDEWICPFCEELL 348


>SB_48410| Best HMM Match : Lig_chan (HMM E-Value=3.5e-05)
          Length = 1084

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -2

Query: 547 IHNNEYF*NLNMYDSFQNTLQNINILSA 464
           I ++EYF   N+  SF NT  NINI+SA
Sbjct: 24  ILSDEYFPAQNISSSFPNTQVNINIISA 51


>SB_46123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 3/84 (3%)
 Frame = +2

Query: 14  SSTDSTANAHRVVKTIVTSPDVYKPVGPYSQAILSD---KTLYISGVLGMDRDAQLVSGG 184
           S +  ++    V  +   S  +  P  PYS A++SD    + +   V  ++ +  LV GG
Sbjct: 395 SKSQDSSPPQSVFSSPKPSSVISTPTTPYSPAVMSDGVPSSRWGHAVCAINENEALVVGG 454

Query: 185 VGAQTRQVLENLKHVVEAGGGSLE 256
            G + + V ++L  +  +  G  E
Sbjct: 455 QGPKFQMVKDSLWLLSSSAAGEFE 478


>SB_13377| Best HMM Match : Extensin_2 (HMM E-Value=0.00046)
          Length = 797

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -1

Query: 257 TPKIHLPPQLHASSFLKLGASVLPLHQIPTAHHDPCRVLPIY 132
           +P++H  P+    ++      VLP +  P  HH P   +P Y
Sbjct: 516 SPRVHQSPRTPVPAYFT--PRVLPAYTTPRVHHSPRTPVPAY 555


>SB_44560| Best HMM Match : DUF1086 (HMM E-Value=1.2)
          Length = 918

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +2

Query: 128 LYISGVLGMDRDAQLVSGGVGAQTRQVLENLKHVVEAGGGSLESVIKTTIL 280
           LY +GV G   +  +       QTRQ+L  + ++++    S++ V   T+L
Sbjct: 548 LYFTGVWGRYSNGSVKETSCDNQTRQILGRIDNLIKCATESIQPVEVETVL 598


>SB_20525| Best HMM Match : E1-E2_ATPase (HMM E-Value=0)
          Length = 1145

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -3

Query: 447 PASVMTRSPLRAIASISTAAFRGSLV 370
           P +++  SP+  + SI+ AA RGSL+
Sbjct: 734 PCALVMTSPIAVVCSITAAARRGSLI 759


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,721,350
Number of Sequences: 59808
Number of extensions: 438968
Number of successful extensions: 896
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)