Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J04
         (677 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20390.1 68416.m02583 endoribonuclease L-PSP family protein c...   125   2e-29
At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein c...    39   0.003
At4g35890.1 68417.m05097 La domain-containing protein contains P...    29   3.7  
At4g18150.1 68417.m02697 hypothetical protein                          29   3.7  
At3g05480.1 68416.m00600 cell cycle checkpoint control protein f...    29   3.7  
At2g43000.1 68415.m05336 no apical meristem (NAM) family protein...    29   3.7  
At1g34060.1 68414.m04222 alliinase family protein contains Pfam ...    28   4.9  
At5g52480.1 68418.m06511 leucine-rich repeat protein, N7-related...    28   6.5  
At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -relat...    28   6.5  
At2g40113.1 68415.m04932 hypothetical protein                          27   8.6  

>At3g20390.1 68416.m02583 endoribonuclease L-PSP family protein
           contains Pfam domain PF01042: Endoribonuclease L-PSP
          Length = 187

 Score =  125 bits (302), Expect = 2e-29
 Identities = 62/130 (47%), Positives = 89/130 (68%), Gaps = 1/130 (0%)
 Frame = +2

Query: 29  TANAHRVVKTIVTSPDVYKPVGPYSQAILSDKTLYISGVLGM-DRDAQLVSGGVGAQTRQ 205
           + +A  V K +V++      +GPYSQAI ++  +++SGVLG+     + VS  V  QT Q
Sbjct: 56  SVSASSVKKEVVSTEKAPAALGPYSQAIKANNLVFLSGVLGLIPETGKFVSESVEDQTEQ 115

Query: 206 VLENLKHVVEAGGGSLESVIKTTILLANMDDFQCVNQIYAEYFPKNCPARATYQVTKLPL 385
           VL+N+  +++A G    SV+KTTI+LA++ DF+ VN+IYA+YFP   PAR+TYQV  LPL
Sbjct: 116 VLKNMGEILKASGADYSSVVKTTIMLADLADFKTVNEIYAKYFPAPSPARSTYQVAALPL 175

Query: 386 NAAVEIEAIA 415
           NA +EIE IA
Sbjct: 176 NAKIEIECIA 185


>At3g04480.1 68416.m00475 endoribonuclease L-PSP family protein
           contains Pfam domain PF01902: Domain of unknown function
          Length = 715

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
 Frame = +2

Query: 89  VGPYSQAILSDKTLYISGVLGMDRDA-QLVSGGVGAQTRQVLENLKHVVEAGGGSLES 259
           +GPYSQA L    L+++G LG+D     L + G  A+  Q L N + + E+   S+ S
Sbjct: 425 IGPYSQATLHQSVLHMAGQLGLDPPTMNLQTEGAIAELNQALTNSEAIAESFNCSISS 482


>At4g35890.1 68417.m05097 La domain-containing protein contains Pfam
           PF05383: La domain
          Length = 523

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -3

Query: 450 GPASVMTRSPLRAIASISTAAFRGSLVT 367
           GP+S  +R+P+  IAS+S AA   +++T
Sbjct: 64  GPSSPQSRAPIEPIASVSVAAPTAAVLT 91


>At4g18150.1 68417.m02697 hypothetical protein 
          Length = 762

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 15/51 (29%), Positives = 31/51 (60%)
 Frame = +2

Query: 176 SGGVGAQTRQVLENLKHVVEAGGGSLESVIKTTILLANMDDFQCVNQIYAE 328
           +GGV A +R+V+++LK +VE      E  I   ++  +M+  + VN++ ++
Sbjct: 12  NGGVPASSRKVIQDLKEIVECS----ELEIYAMLVECDMNPDEAVNRLLSQ 58


>At3g05480.1 68416.m00600 cell cycle checkpoint control protein
           family contains Pfam profile PF04139: Rad9; contains
           Prosite PS00976: Myristoyl-CoA:protein
           N-myristoyltransferase signature 2; similar to
           radio-resistance/chemo-resistance/cell cycle checkpoint
           control protein (GI:3869274) [Mus musculus]
          Length = 439

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 10/67 (14%)
 Frame = -1

Query: 236 PQLHASSFLKLGASVL--PLHQIP-----TAHHDPCRV---LPIYRESCQIKWLDCRVQP 87
           PQ H S  LK   SVL  PL  I         HD  +V   L  Y    +  W+ C V+P
Sbjct: 66  PQAHFSVLLKAVCSVLRTPLASIDHMSVQLPDHDASKVKWTLQCYSGMKKTYWITCNVEP 125

Query: 86  VYRHLGM 66
             +HL +
Sbjct: 126 DIQHLSL 132


>At2g43000.1 68415.m05336 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
          Length = 275

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 5   SKMSSTDSTANAHRVVKTIVTSPDVYKPVGPY 100
           SK SS DS   +HR V ++   P + +P  PY
Sbjct: 192 SKTSSLDSDHTSHRTVDSMSHEPPLPQPQNPY 223


>At1g34060.1 68414.m04222 alliinase family protein contains Pfam
           profiles: PF04864 allinase C-terminal domain, PF04863
           alliinase EGF-like domain
          Length = 463

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 98  YSQAILSDKTLYISGVLGMDRDAQLVSGGVGAQTR-QVLENLKHVVEAGGGSLES 259
           +   ++ DK +Y      MDR  +L S GV  +T+  VL+ LK VV  GG  + S
Sbjct: 294 FGWGLVKDKAIYEK----MDRFIRLTSMGVSKETQLHVLQLLKVVVGDGGNEIFS 344


>At5g52480.1 68418.m06511 leucine-rich repeat protein, N7-related
           contains PF00560: Leucine Rich Repeat; similar to F-box
           protein Fbl2 (GI:6164721) [Homo sapiens]
          Length = 241

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 368 VTKLPLNAAVEIEAIALSGDLVITEAGPCPCART*YINIL 487
           V KLP+   +E+  I+LSG+ +      CP  +T  +N L
Sbjct: 73  VVKLPMLEELEVSGISLSGESMKLAGLSCPNLKTLMLNRL 112


>At2g20190.1 68415.m02361 CLIP-associating protein (CLASP) -related
           similar to CLIP-associating protein CLASP2 (GI:13508651)
           [Rattus norvegicus]
          Length = 1439

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +2

Query: 137 SGVLGMDRDAQLVSGGVGAQTRQVLENLKHVVEAGGGSLESVIKTT 274
           S ++ MDR + L SGG    +  +L   K V +    SLESV++++
Sbjct: 540 SAIVAMDRSSNLSSGG-SLSSGLLLSQSKDVNKGSERSLESVLQSS 584


>At2g40113.1 68415.m04932 hypothetical protein
          Length = 144

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 248 IHLPPQLHASSFLKLGASVLPLHQIPTAHH 159
           IHLP  LHA   L+    V P+H +P  +H
Sbjct: 66  IHLPSHLHAIPQLEKACFVKPIH-VPKHYH 94


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,489,186
Number of Sequences: 28952
Number of extensions: 309535
Number of successful extensions: 764
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)