Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0005_J03
         (613 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_31309| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.2  
SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)                      27   9.1  

>SB_16861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2214

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 467  YVRLRNYKYILINKLLKCLFVMSIFFFLIDMNVYTI 360
            Y+  RNYK+++I  L+  + +  +  F+  M  YT+
Sbjct: 2173 YIIWRNYKWLIIGLLILIVIIALVVIFVYSMPGYTV 2208


>SB_31309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 648

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +2

Query: 311 LIKNLQKLRYVTLERSLS-CIHSYLLRKKKLTLQTDTSI 424
           L+KN++KLR V L   +S  ++S +LR  KL   T  S+
Sbjct: 573 LMKNVKKLRRVLLSHMVSGVVYSCMLRHDKLETLTSKSL 611


>SB_45599| Best HMM Match : GRP (HMM E-Value=0.22)
          Length = 595

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = +1

Query: 19  KLIDWRYQCYDHSMSSLRWCFKCWR 93
           KLI    + + H    + WC+ CW+
Sbjct: 29  KLIRMAPRAFTHKFKKIVWCWSCWQ 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,950,245
Number of Sequences: 59808
Number of extensions: 322798
Number of successful extensions: 470
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 470
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)