Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0005_J02
(619 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56457| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.57
SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17) 31 0.99
SB_33973| Best HMM Match : ABC_tran (HMM E-Value=0) 31 0.99
SB_5811| Best HMM Match : IKI3 (HMM E-Value=0.0021) 29 3.0
SB_55816| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2) 29 4.0
SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_48389| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_18971| Best HMM Match : PWP2 (HMM E-Value=4) 28 7.0
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_25423| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_15918| Best HMM Match : Toxin_23 (HMM E-Value=2.3) 27 9.2
>SB_56457| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 31.5 bits (68), Expect = 0.57
Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 2/109 (1%)
Frame = +3
Query: 183 LKVPNKQADIVVSFETTQSNEQSYKDLVMPLITQLVDNLKSKQITDIKIYLAGHTSKYPY 362
++V D+V FET +NE + + P V L K D K GHT
Sbjct: 1 MEVEKSPTDVVQEFETLAANEVKKERRIAPGEAHFVWKLIQKHGEDYKAERLGHTCVLMS 60
Query: 363 PILYDTDLKLKSSKLHFDDKER-YERMP-FVKTGCDTFDKYEKNVIDFM 503
Y SK DKE Y+ P +K C+ F + ++ +++
Sbjct: 61 FAGYTFSHAPLYSKAMSKDKENYYQHTPKQLKRKCEAFLRSSQDFSEYL 109
>SB_35638| Best HMM Match : Upf2 (HMM E-Value=2.1e-17)
Length = 1420
Score = 30.7 bits (66), Expect = 0.99
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +3
Query: 234 QSNEQSYKDLVMPLITQLVDNLKSKQITD 320
+ N+Q Y+DL +P+ + L N++ KQ+ +
Sbjct: 293 KGNKQQYRDLEIPISSDLAANMREKQVAE 321
>SB_33973| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 1184
Score = 30.7 bits (66), Expect = 0.99
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 121 GSTAGSSPVRASAAYPLARSQAWCKSLAASVPDTAWM 11
GS S + S PLA + +CK A VP+T W+
Sbjct: 449 GSGKTSLLLTISGELPLASGELYCKGRVAYVPETPWL 485
>SB_5811| Best HMM Match : IKI3 (HMM E-Value=0.0021)
Length = 567
Score = 29.1 bits (62), Expect = 3.0
Identities = 24/69 (34%), Positives = 29/69 (42%)
Frame = -3
Query: 230 SFEGDDNICLLVWHFELINVSDGVRLVRVGAAHASVRQHSRQQSREGQRRVSSRQVTGLV 51
SF DD+ C + W DG V A+ + R SREG SS +V GL
Sbjct: 190 SFPWDDHHCRISWR------GDGQYFVVSAIEPATDARKLRVWSREGVLMTSSEEVDGLE 243
Query: 50 QVLSGVCSG 24
Q L SG
Sbjct: 244 QSLCWKPSG 252
>SB_55816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 706
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +3
Query: 372 YDTDLKLKSSKLHFDDKERYERMPFVKTGCDTFDKYEKNVID 497
YD + K K+H+DD E Y + D +D Y+ N D
Sbjct: 636 YDDNEGSKMVKVHWDDYENYVNVNVNDDDYDDYDDYDDNDYD 677
>SB_45659| Best HMM Match : E_Pc_C (HMM E-Value=1.2)
Length = 1244
Score = 28.7 bits (61), Expect = 4.0
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Frame = +3
Query: 291 DNLKSKQI--TDIKIY--LAGHTSKYPYPILYDTDLKLKSSKLHFDDKERYERMPFVKTG 458
DN+K+K+I T K+Y L ++K L + + K H +KE++ +P KTG
Sbjct: 19 DNVKTKRILTTSEKLYRRLRIASAKESQKKLLQNVQEEMTVKQHEKEKEKFREVPRPKTG 78
Query: 459 CDTFDKYEKNVIDF-MDTLKIK 521
D+ K D + TL +K
Sbjct: 79 PDSKSKRNVPAEDLNLPTLPVK 100
>SB_11111| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1252
Score = 28.7 bits (61), Expect = 4.0
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = +3
Query: 273 LITQLVDNLKSKQITDIKIYLAGHTSKYPYPILYDTDLKLKSSKLHFDD 419
+++ LV +++ KQ+ D + AG Y Y +L T L L + K+H +D
Sbjct: 221 ILSVLVKDVQEKQLFDKERMRAG----YEYEVLGGTHLMLATQKMHAED 265
>SB_48389| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 272
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +3
Query: 369 LYDTDLKLKSSKLHFDDKERYERMPFVKTGCDTFDKYEKNVID 497
+ + +L LKSS+L F +KE E+ ++ D Y ++D
Sbjct: 161 ILEKELLLKSSQLAFLEKELEEQQRLLEEETKEIDSYSNQLVD 203
>SB_18971| Best HMM Match : PWP2 (HMM E-Value=4)
Length = 400
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +3
Query: 78 YAALALTGLLPAVLPDACVRCTDADKPHAIGDVYQLKVPNKQADIVVSFETTQSNEQSYK 257
Y AL +T D C+ + D AIGD ++VP K+ DI S N +
Sbjct: 20 YKALTVTHKQSFKYNDTCLNYSSKDVVMAIGDA--IEVPLKEEDISTSHPLPSYNPNAPP 77
Query: 258 DLVMPLI 278
+++ +
Sbjct: 78 KIIVKFV 84
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 27.5 bits (58), Expect = 9.2
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Frame = +1
Query: 355 IPTLSYTILI*N*RAPNYISTTKSATSVCLLSKLD---------VIHSTNMKRTLST 498
IP++S +IL N +TT+ ATSV LLS L+ V+ T MKRT T
Sbjct: 756 IPSISTSILPYNTTVIATPNTTRIATSVILLSSLNDTIRTRSTSVVFETTMKRTQIT 812
>SB_25423| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 528
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = +3
Query: 303 SKQITDIKI-YLAGHTSKYPYPILYDTDLKLKSSKLHFDDKERYERMPFV 449
S+QIT + LA +SK+P+P+L D L++ S D + P++
Sbjct: 2 SEQITCFLLPVLATPSSKFPFPVLVDAVLRMLKSMSSTSDGAIHGASPWL 51
>SB_15918| Best HMM Match : Toxin_23 (HMM E-Value=2.3)
Length = 227
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 345 TSKYPYPILYDTDLKLKSSKLH 410
T YP+P LYDT L L++ H
Sbjct: 203 TEIYPHPSLYDTQLNLQTKISH 224
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,857,747
Number of Sequences: 59808
Number of extensions: 360985
Number of successful extensions: 930
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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