Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0003_P05
         (354 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07620.1 68416.m00912 exostosin family protein contains Pfam ...    28   1.6  
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel...    27   2.7  
At5g19460.1 68418.m02319 MutT/nudix family protein similar to SP...    27   3.6  
At1g08650.1 68414.m00960 phosphoenolpyruvate carboxylase kinase ...    26   6.3  
At5g63900.1 68418.m08023 PHD finger family protein contains Pfam...    26   8.3  

>At3g07620.1 68416.m00912 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 470

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 36  ASLIYHTNSNSLWLSF*SPPALLYSVYQLCHRQLCI*RNNLYSPSAG 176
           +S +Y + S+SLW S  SP  +  S++   HR     + N  +P +G
Sbjct: 34  SSHLYFSTSSSLWTSSFSPAFITVSIFLTVHRFREKRKRNGSNPGSG 80


>At3g19430.1 68416.m02464 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein [Picea glauca] GI:1350543
          Length = 559

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = +1

Query: 223 PDPRIPAI*LLCDKHPHDSCGHPPAAVPCCMPPSVALSADLTPT 354
           P P +P+   +    P  S   PP   P    PSV    D+TPT
Sbjct: 188 PTPSVPSPPDVTPTPPTPSVPSPPDVTPTPPTPSVPSPPDVTPT 231


>At5g19460.1 68418.m02319 MutT/nudix family protein similar to
           SP|P41888 Thiamine pyrophosphokinase (EC 2.7.6.2) (TPK)
           (Thiamine kinase) {Schizosaccharomyces pombe}; contains
           Pfam profile PF00293: NUDIX domain
          Length = 374

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = -2

Query: 353 VGVRSADRATDGGIQQGTAAGGCPHE-SCG--CLSQSSQIAGI 234
           +G RS  ++T  G+     AGG PH  SCG   + +  + AGI
Sbjct: 224 IGKRSLSKSTYPGMLDHLVAGGLPHGISCGGNLVKECEEEAGI 266


>At1g08650.1 68414.m00960 phosphoenolpyruvate carboxylase kinase
           identical to phosphoenolpyruvate carboxylase kinase
           [Arabidopsis thaliana] gi|6318613|gb|AAF06968; contains
           protein kinase domain, Pfam:PF00069
          Length = 284

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 331 EPQTGAYSKVQQQGDAHMSHAGVCHRVVR 245
           EPQT +++K   Q  +H    GV HR ++
Sbjct: 114 EPQTASFAKQILQALSHCHRYGVVHRDIK 142


>At5g63900.1 68418.m08023 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 557

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +3

Query: 279 MWASPCCCTLLYAPVCGSVGGP 344
           +W  PCCC      +CGS+  P
Sbjct: 293 LWFCPCCC----CDICGSMESP 310


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,186,950
Number of Sequences: 28952
Number of extensions: 168517
Number of successful extensions: 442
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 449370720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)