Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0005_P09
         (345 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    23   0.77 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   1.8  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   1.8  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   9.5  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    20   9.5  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    20   9.5  
AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS protein.    20   9.5  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    20   9.5  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 23.4 bits (48), Expect = 0.77
 Identities = 11/44 (25%), Positives = 18/44 (40%)
 Frame = +2

Query: 47  RYLIYFSCYLQISFQRSTPQDSHYVAAVVEYQVSRGNVEQNRLN 178
           R ++YF C       R     S Y   +   ++  G ++  RLN
Sbjct: 439 REILYFRCSNLNHMMREEFYQSQYGDPINNCEIKAGEIDAERLN 482


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +2

Query: 8    VIV*FVHKMTYLLRYLIYFSCYLQISFQRSTPQDSHYVAAVVEYQVSRGNVE 163
            +IV  V ++ Y L+ L      +Q+S+      +S     V+EY++S+G+ E
Sbjct: 870  MIVQEVPEVPYGLKVLDKSGRSVQLSWAAPYDGNSPIKRYVIEYKISKGSWE 921


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 22.2 bits (45), Expect = 1.8
 Identities = 7/12 (58%), Positives = 11/12 (91%)
 Frame = -2

Query: 299 RCTSPWIGTPKL 264
           +CTSP++G P+L
Sbjct: 15  QCTSPFLGGPQL 26


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +1

Query: 58  IFFLLLADLI 87
           +FFLLLA++I
Sbjct: 284 VFFLLLAEII 293


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +1

Query: 58  IFFLLLADLI 87
           +FFLLLA++I
Sbjct: 280 VFFLLLAEII 289


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +1

Query: 58  IFFLLLADLI 87
           +FFLLLA++I
Sbjct: 293 VFFLLLAEII 302


>AF487333-1|AAL93262.1|   80|Apis mellifera integrin betaPS
          protein.
          Length = 80

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -2

Query: 65 KNILDIVEDTSFYVQTTR 12
          KNI+ + +DTS +    R
Sbjct: 30 KNIMTLSQDTSHFASLVR 47


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 274 VPIHGLVQRYPIPGLH 321
           +P H LV   P P LH
Sbjct: 33  IPEHWLVYPEPNPSLH 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,797
Number of Sequences: 438
Number of extensions: 1921
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)