Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_L05
         (436 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              25   0.28 
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   2.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   2.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   2.6  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    22   3.4  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   6.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   6.0  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 25.4 bits (53), Expect = 0.28
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +3

Query: 9   QAFERNEEQTVSLSEVSDSSGKVKATALAKPLRQEQLKPQESYILDTV-SGN 161
           Q F RN++++   +      G+ +   + +   +E L+P  S  L  V SGN
Sbjct: 369 QCFVRNDQESAQATAELKLGGRFEPPQIRQAFAEETLQPGPSMFLKCVASGN 420


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = -3

Query: 320 REVLFEGSRLSALQYSGYV---DPRW 252
           RE++ + SR+SA   SGY+   D +W
Sbjct: 325 REIMNKESRISAAIDSGYILNNDGKW 350


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = -3

Query: 320 REVLFEGSRLSALQYSGYV---DPRW 252
           RE++ + SR+SA   SGY+   D +W
Sbjct: 325 REIMNKESRISAAIDSGYILNNDGKW 350


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 13/62 (20%), Positives = 24/62 (38%)
 Frame = +3

Query: 90  LAKPLRQEQLKPQESYILDTVSGNIYVWIGKQSTEKEKSEAMTKAQQTLSAKNYPSWVHV 269
           +  PL Q+Q    +      +   +Y W+  Q   K   +  T+ Q     K +    ++
Sbjct: 236 VTSPLSQQQQAAPQGAASANLPSPLYPWMRSQFERKRGRQTYTRYQTLELEKEFHYNRYL 295

Query: 270 TR 275
           TR
Sbjct: 296 TR 297


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -3

Query: 284 LQYSGYVDPRWIIFS*QSLLGFCHGFRLFLFSRLLPDPYVDVPTY 150
           + ++G   P  ++F  +SL        L    R L + +VD PT+
Sbjct: 296 IPFNGIQMPNLMVFYEKSLALAAFSLMLTSILRYLQELHVDAPTW 340


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 284 GH*AGCLQTILLDLEG 331
           GH +GCLQ ++  L+G
Sbjct: 290 GHWSGCLQFLVPMLQG 305


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 284 GH*AGCLQTILLDLEG 331
           GH +GCLQ ++  L+G
Sbjct: 258 GHWSGCLQFLVPMLQG 273


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,458
Number of Sequences: 438
Number of extensions: 2621
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)