Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0004_C11
         (386 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.30 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    24   0.70 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   2.1  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   6.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.30
 Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = +2

Query: 38  ENKEHGHPSDENRHVG--DLGNAEFDKNYSSKIDMIDPH 148
           +N ++ H +DENRH    D+ +       S  ID  + H
Sbjct: 229 DNSDYSHTTDENRHSSTLDIDHKMLTPIKSEPIDAYEMH 267


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.8 bits (49), Expect = 0.70
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
 Frame = +2

Query: 110 KNYSSKIDMIDPHLAITGAHGILGRAVVL---HERADDFGR--TDHPD 238
           KNY     + + H+     H ILG +  L   H++   FGR   DH D
Sbjct: 268 KNYGGVYHLDNHHVHHANHHAILGHSGFLCERHQKRYFFGRDSVDHVD 315


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.2 bits (45), Expect = 2.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)
 Frame = -2

Query: 172 PVCSGNGEMRVDHINL 125
           PVC+ NG++  +H  L
Sbjct: 116 PVCASNGKIYANHCEL 131


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -3

Query: 255 LPVFLESGWSVRP 217
           LPVFL   W V P
Sbjct: 555 LPVFLAEIWDVTP 567


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,849
Number of Sequences: 438
Number of extensions: 2138
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9391092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)