Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_M08
         (472 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g08310.1 68418.m00978 pentatricopeptide (PPR) repeat-containi...    29   1.6  
At1g61460.1 68414.m06925 S-locus protein kinase, putative contai...    29   2.1  

>At5g08310.1 68418.m00978 pentatricopeptide (PPR) repeat-containing
            protein contains Pfam profile PF01535: PPR repeat
          Length = 1280

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 18/64 (28%), Positives = 28/64 (43%)
 Frame = +3

Query: 66   KINMNSVRILIFVAICVMFVSTVTAWDFFKELEGVGQRVRDAIISAGPAIDVLQKAKDIA 245
            KI+ + +  L  +A C        AW FFK L+  G   +    +    +DVL +A  + 
Sbjct: 1085 KIDPDEITFLCLLAACSHGGLVKEAWHFFKSLKESGAEPKSEHYAC--MVDVLSRAGLVK 1142

Query: 246  DGRD 257
            D  D
Sbjct: 1143 DAHD 1146


>At1g61460.1 68414.m06925 S-locus protein kinase, putative contains
           similarity to KI domain interacting kinase 1 [Zea mays]
           gi|2735017|gb|AAB93834; contains S-locus glycoprotein
           family domain, Pfam:PF00954
          Length = 598

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -3

Query: 290 YYKICISFFIRVTAVCDVFS--LLQYIDRWTSANY 192
           YY +C  F I V +VC  F   + +YI+ W   N+
Sbjct: 102 YYGVCGPFGICVKSVCKCFKGFIPKYIEEWKRGNW 136


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,463,703
Number of Sequences: 28952
Number of extensions: 147774
Number of successful extensions: 315
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)