Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_M07
(445 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.43
SB_7677| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.0
SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38) 28 4.0
SB_58205| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21) 27 5.3
SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23) 27 7.0
SB_10552| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_30085| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_50529| Best HMM Match : 7TMR-HDED (HMM E-Value=2.3) 27 9.2
SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_11307| Best HMM Match : Pam16 (HMM E-Value=5.4) 27 9.2
>SB_39468| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1778
Score = 31.1 bits (67), Expect = 0.43
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 2/97 (2%)
Frame = +1
Query: 70 EDQPEQWANSRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLSALGSVDLTNQMKLGAA 249
+++P V+ + T+N + +K + GN + L A S N K G
Sbjct: 651 DNEPVTETIDSVKEEDSKATINCIRNNNTYIKQSVEGNNSFSLDASSS---ENVRKEGDK 707
Query: 250 TAGLAY-DNVNGHGATLT-KTHIPGFGDKMTAAGKVN 354
++Y DN+N A T + IPG K + KVN
Sbjct: 708 DVVISYSDNMNNSKAANTDQFGIPGSDSKTGSDSKVN 744
>SB_7677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 28.7 bits (61), Expect = 2.3
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +2
Query: 11 SASTAGTCSLKSLVTTLNNMRISRSSGPTPGCAGKRVH*LSTQTAPQVLWSRYL*LETKI 190
SA+TA S+ + TL +S ++GPTP + ++ L+ + + L + + +
Sbjct: 113 SATTAQDSSVLDTLATLATATLSHNTGPTPSTSMQQATSLAGRISVTPLTLSQNTISSSL 172
Query: 191 TG-SVPLAP 214
+G S PL P
Sbjct: 173 SGLSTPLTP 181
>SB_33543| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 838
Score = 27.9 bits (59), Expect = 4.0
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 29 TCSLKSLVTTLNNMRISRSSGPTPGC 106
T + K+++TTL MRI ++GP C
Sbjct: 654 TTTKKTIITTLTTMRICAANGPLIDC 679
>SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)
Length = 550
Score = 27.9 bits (59), Expect = 4.0
Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
Frame = +1
Query: 151 GAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGFGDK 330
G V +T E +L ALG +T+ + T L++ N + A+ K+ I G
Sbjct: 401 GIYVGGAVTAMEEDQLVALG---VTHVLNAAQGTKRLSHVNTD---ASFYKSGIIFHGIP 454
Query: 331 MTAAG--KVNLFHNDNHDFSAKAFATKNLP 414
T K+N + ++ DF A A TKN P
Sbjct: 455 ATDVFMFKLNKYFDEAADFIASAVGTKNCP 484
>SB_58205| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +3
Query: 102 GAPASGCTNCQLRRHLRCYGQGTYNWKRKS 191
G PA N QL R RC TY W RKS
Sbjct: 73 GKPAYFAKNLQLDRK-RCLYPKTYTWDRKS 101
>SB_47642| Best HMM Match : RVT_1 (HMM E-Value=6.7e-21)
Length = 1336
Score = 27.5 bits (58), Expect = 5.3
Identities = 22/87 (25%), Positives = 37/87 (42%)
Frame = +1
Query: 22 SRYVLVEEPGYYIEQYEDQPEQWANSRVRRQAGALTVNSDGTSGAMVKVPITGNENHRLS 201
+R + EP ++ EDQ E A+S +R +AG +D G + + T N NH
Sbjct: 1183 ARKAQINEPPSPLKVQEDQRETEAHSPIRTRAGREATCNDHLKGCVNQA--TCN-NHLKG 1239
Query: 202 ALGSVDLTNQMKLGAATAGLAYDNVNG 282
+ + +K G D++ G
Sbjct: 1240 CVNQATCNDHLK-GCVNQATCNDHLKG 1265
>SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)
Length = 1592
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +3
Query: 123 TNCQLRRHL-RCYGQGTYNWKRKSQAQCPWLRRS 221
TN Q L R Y YNW+ + + PWL ++
Sbjct: 1207 TNIQTNVSLVRKYNSWEYNWRNSLEKRMPWLGKT 1240
>SB_10552| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 27.1 bits (57), Expect = 7.0
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = +1
Query: 223 TNQMKLGAATAGLAYDNVNGHGAT--LTKTHIPGFGDKMTAAGKVNLFHNDNHDFSAKA 393
TNQ L Y+ +N A L + +P G+K +G+ N+ D DFS A
Sbjct: 59 TNQTLLHVVVLDTQYERMNSTYACALLANSRLPCVGEKDCESGEGNISSIDMKDFSNAA 117
>SB_30085| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 472
Score = 26.6 bits (56), Expect = 9.2
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = +1
Query: 34 LVEEPGYYIEQYEDQPEQW 90
L EEPGYYIE + PE W
Sbjct: 210 LDEEPGYYIE--KKAPESW 226
>SB_50529| Best HMM Match : 7TMR-HDED (HMM E-Value=2.3)
Length = 697
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 5 FWSASTAGTCSLKSLVTTLNNMRISRSSGPTPGCAGKRVH*LSTQTAPQVLWSRYL 172
FW +S+ + S S+ +L+++R S G + LS T P W+RY+
Sbjct: 262 FWFSSSRFSRSSSSISDSLSSLRSRASWRRLSDVLGSSMVSLSGATTPCSSWTRYV 317
>SB_22524| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 353
Score = 26.6 bits (56), Expect = 9.2
Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Frame = +1
Query: 319 FGDKMTAAG---KVNLFHNDNHDFSAKAF 396
F ++ T++G KV LFH N+ F+AK+F
Sbjct: 35 FAEQDTSSGLTTKVCLFHGKNNPFTAKSF 63
>SB_11307| Best HMM Match : Pam16 (HMM E-Value=5.4)
Length = 405
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 5 FWSASTAGTCSLKSLVTTLNNMRISRSSGPTPGCAGKRVH*LSTQTAPQVLWSRYL 172
FW +S+ + S S+ +L+++R S G + LS T P W+RY+
Sbjct: 69 FWFSSSRFSRSSSSISDSLSSLRSRASWRRLSDVLGSSMVSLSGATTPCSSWTRYV 124
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.313 0.131 0.381
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,594,168
Number of Sequences: 59808
Number of extensions: 296146
Number of successful extensions: 608
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 577
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 608
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
- SilkBase 1999-2023 -