Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_M04
         (531 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40333| Best HMM Match : No HMM Matches (HMM E-Value=.)             229   1e-60
SB_10202| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.027
SB_8185| Best HMM Match : Rho_N (HMM E-Value=0.0007)                   31   0.77 
SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)                   28   4.1  
SB_41761| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.025)             28   4.1  
SB_12732| Best HMM Match : Y_phosphatase (HMM E-Value=0)               28   5.4  
SB_4273| Best HMM Match : DUF836 (HMM E-Value=2.6)                     27   7.2  
SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)                27   9.5  
SB_14744| Best HMM Match : 7tm_1 (HMM E-Value=4e-11)                   27   9.5  
SB_20521| Best HMM Match : Y_phosphatase (HMM E-Value=0)               27   9.5  
SB_19018| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_40333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 339

 Score =  229 bits (560), Expect = 1e-60
 Identities = 109/176 (61%), Positives = 127/176 (72%)
 Frame = +3

Query: 3   NVVHVKSLPNVKCRHHDVDCIIIREQTEGEYSALEHESVPGVVECLKIITAAKSERIAKF 182
           NVVH +SLP +K RH ++D +IIREQTEGEY++LEHESVPGVVE LKIIT  KS+RIAKF
Sbjct: 97  NVVHCRSLPGIKTRHDNIDIVIIREQTEGEYTSLEHESVPGVVEMLKIITRRKSQRIAKF 156

Query: 183 AFDYAVKMGRKKVTAVHKANIMKLGDGLFLRSCEEMAKLYPRIQFEKMIVDNCTMQMVSN 362
           AFDYA K  RKKVT VHKANIMK  DGLFL +C ++AKLYP+I FE MIVDN  MQ+V+ 
Sbjct: 157 AFDYATKHNRKKVTCVHKANIMKKADGLFLNTCADVAKLYPKIHFEGMIVDNTCMQLVAK 216

Query: 363 PNQFDVMVTPNLYGNIVDNXXXXXXXXXXXXXXXXXXXECAVFEQGARHIFSGAVG 530
           P QFDVMV PNLYG+IVDN                     A+FE GARH ++   G
Sbjct: 217 PQQFDVMVLPNLYGSIVDNVGAGLVGGAGLVPGVSIGSHFAIFEPGARHTYAQMAG 272


>SB_10202| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1165

 Score = 35.5 bits (78), Expect = 0.027
 Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
 Frame = -2

Query: 287 LFTTPKEESIT*FHDVRLVDGGYLLTAHLDRVIESEFRDTFRFRSGDNLQA-LDHARHRL 111
           +FT  + E +    D+R +D    ++  LD ++ +  +++F+     NL +  +  + +L
Sbjct: 542 IFTNKEGEQVDVKRDIRFIDSFKFMSTSLDSLVSNMSKESFK-----NLTSYYEGEQLQL 596

Query: 110 MFQSGVFSFCLFSDDDAVDIV 48
           + + GVF +  F D D +D V
Sbjct: 597 LLRKGVFPYDWFGDSDKLDTV 617


>SB_8185| Best HMM Match : Rho_N (HMM E-Value=0.0007)
          Length = 1133

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 19/79 (24%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = -2

Query: 284 FTTPKEESIT*FHDVRLVDGGYLLTAHLDRVIESEFRDTFRFRSGDNLQALDHARH-RLM 108
           FT  + + +    D+R +D    ++A LD ++ +  +++F+     NL         RL+
Sbjct: 685 FTNKEGKQVDVKRDIRFIDSFKFMSASLDSLVSNLPKESFK-----NLTTYYEGEQLRLL 739

Query: 107 FQSGVFSFCLFSDDDAVDI 51
            + GVF +  F D   +D+
Sbjct: 740 LRKGVFPYDWFGDFGKLDV 758


>SB_26497| Best HMM Match : DUF963 (HMM E-Value=0.24)
          Length = 889

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = +1

Query: 451 SSPALPTARSVPSSNRALGTYSQALS 528
           S+ ++P A SVPS++ +LGT SQ+ S
Sbjct: 515 STTSVPFASSVPSTDPSLGTASQSAS 540


>SB_41761| Best HMM Match : DNA_pol_B_2 (HMM E-Value=0.025)
          Length = 1480

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/78 (23%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
 Frame = -2

Query: 284 FTTPKEESIT*FHDVRLVDGGYLLTAHLDRVIESEFRDTFRFRSGDNLQALDHARHRLMF 105
           FT  + + +    D+R +D    ++  LD ++ +  +++F+     NL         L+ 
Sbjct: 584 FTNKEGKQVDVKRDIRFIDSFKFMSISLDSLVSNLSKESFK-----NLTTYYEGEQLLLL 638

Query: 104 -QSGVFSFCLFSDDDAVD 54
            + GVF +  F D D +D
Sbjct: 639 LRKGVFPYDWFGDFDKLD 656


>SB_12732| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 800

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 449 TGPANKSAGEVVYYVAVQVGRDHHVELVRVRYHLHRAVVHDHL 321
           +G    +AG+VV           H++LVR   HL     HDHL
Sbjct: 584 SGGRRSTAGDVVLEAMFDDKSHDHLDLVRDHDHLDLVRDHDHL 626


>SB_4273| Best HMM Match : DUF836 (HMM E-Value=2.6)
          Length = 217

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = +3

Query: 213 KKVTAVHKANIMKLGD-GLFLRSCEEMAKLYPRIQFEKMIVDNCTMQMVSNPNQFDVMVT 389
           KK+    + ++ ++ D G+ LR  EE       I +E+ I  N       + +QF  +  
Sbjct: 59  KKILKRLQLSVAEMEDPGVILRKLEEHFVPVRNILYERYIFHNTEQLAHESIDQFLQLAK 118

Query: 390 PNLYGNIVD 416
           P L+G I D
Sbjct: 119 PCLFGTIED 127


>SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)
          Length = 197

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = +2

Query: 5   RGSCQVPA*REVPASRCRLHHHQRTDRRRILRSGT*VCAWRGRVLEDYHRCE 160
           + +C+    R+     C+     R DR+  + +    C WR     D HRC+
Sbjct: 129 KSTCRWRLDRQADIHTCKSTCRWRLDRQADIHTCKSTCRWRINRQADIHRCK 180


>SB_14744| Best HMM Match : 7tm_1 (HMM E-Value=4e-11)
          Length = 372

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = -3

Query: 355 TICIVQLSTIIFSNWILGYSFAISSQLRRKS 263
           TI + +  TI+ +N ++  +F+IS+QLR+ S
Sbjct: 88  TIAVAEGLTIVTANLLVILTFSISTQLRKPS 118


>SB_20521| Best HMM Match : Y_phosphatase (HMM E-Value=0)
          Length = 834

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/48 (25%), Positives = 24/48 (50%)
 Frame = -2

Query: 479 LRAVGSAGDDTGPANKSAGEVVYYVAVQVGRDHHVELVRVRYHLHRAV 336
           +  V +  ++   A  SA  +++Y+  Q+       L + RYHLH+ +
Sbjct: 786 METVPAEANERPAAASSAVRILFYLPNQIAACKSCVLTQPRYHLHQTM 833


>SB_19018| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 434

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 35  EVPASRCRLHHHQRTDRRRILRSGT*VCAWRGRVLEDYHRC 157
           EV  S C +   Q      I ++G  V AW+G   E+Y  C
Sbjct: 75  EVQWSSCNIFSTQDHAAAAIAKTGVPVYAWKGETDEEYIWC 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,607,726
Number of Sequences: 59808
Number of extensions: 353464
Number of successful extensions: 1108
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 958
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1103
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1191330434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)