Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_M04
(531 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g17130.1 68415.m01977 isocitrate dehydrogenase subunit 2 / NA... 206 9e-54
At4g35260.1 68417.m05011 isocitrate dehydrogenase subunit 1 / NA... 203 5e-53
At4g35650.1 68417.m05062 isocitrate dehydrogenase, putative / NA... 198 2e-51
At2g17130.2 68415.m01978 isocitrate dehydrogenase subunit 2 / NA... 196 8e-51
At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NA... 173 8e-44
At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NA... 168 2e-42
At1g32480.1 68414.m04008 isocitrate/isopropylmalate dehydrogenas... 105 1e-23
At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase, chloro... 70 9e-13
At1g80560.1 68414.m09445 3-isopropylmalate dehydrogenase, chloro... 70 1e-12
At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase, chloro... 69 1e-12
At5g15540.1 68418.m01819 expressed protein low similarity to DNA... 29 1.5
At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pf... 29 1.5
At3g51370.2 68416.m05627 protein phosphatase 2C, putative / PP2C... 29 2.6
At3g51370.1 68416.m05626 protein phosphatase 2C, putative / PP2C... 29 2.6
At1g55680.1 68414.m06374 WD-40 repeat family protein contains 2 ... 28 3.4
At1g14550.1 68414.m01729 anionic peroxidase, putative similar to... 28 3.4
At4g10080.1 68417.m01649 expressed protein 28 4.5
At3g45780.1 68416.m04953 protein kinase / nonphototropic hypocot... 28 4.5
At5g06370.1 68418.m00713 NC domain-containing protein contains P... 27 6.0
At4g21120.1 68417.m03054 amino acid permease family protein simi... 27 7.9
At4g17690.1 68417.m02642 peroxidase, putative similar to peroxid... 27 7.9
>At2g17130.1 68415.m01977 isocitrate dehydrogenase subunit 2 / NAD+
isocitrate dehydrogenase subunit 2 nearly identical to
NAD+ dependent isocitrate dehydrogenase subunit 2
[Arabidopsis thaliana] GI:1766048
Length = 367
Score = 206 bits (502), Expect = 9e-54
Identities = 99/167 (59%), Positives = 119/167 (71%)
Frame = +3
Query: 3 NVVHVKSLPNVKCRHHDVDCIIIREQTEGEYSALEHESVPGVVECLKIITAAKSERIAKF 182
++V+ +LP + RH +VD ++IRE TEGEY+ LEHE VPGVVE LK+IT SERIAK+
Sbjct: 124 SLVNCFNLPGLASRHENVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKY 183
Query: 183 AFDYAVKMGRKKVTAVHKANIMKLGDGLFLRSCEEMAKLYPRIQFEKMIVDNCTMQMVSN 362
AF+YA RKKVTAVHKANIMKL DGLFL SC+E+AK YP I + ++IVDNC MQ+V+
Sbjct: 184 AFEYAYLNNRKKVTAVHKANIMKLADGLFLESCQEVAKKYPSIAYNEIIVDNCCMQLVAR 243
Query: 363 PNQFDVMVTPNLYGNIVDNXXXXXXXXXXXXXXXXXXXECAVFEQGA 503
P QFDVMVTPNLYGN+V N E AVFEQGA
Sbjct: 244 PEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGAEYAVFEQGA 290
>At4g35260.1 68417.m05011 isocitrate dehydrogenase subunit 1 / NAD+
isocitrate dehydrogenase subunit 1 nearly identical to
NAD+ dependent isocitrate dehydrogenase subunit 1
[Arabidopsis thaliana] GI:1766046
Length = 367
Score = 203 bits (496), Expect = 5e-53
Identities = 98/167 (58%), Positives = 118/167 (70%)
Frame = +3
Query: 3 NVVHVKSLPNVKCRHHDVDCIIIREQTEGEYSALEHESVPGVVECLKIITAAKSERIAKF 182
++V+ +LP + RH +VD ++IRE TEGEY+ LEHE VPGVVE LK+IT SERIAK+
Sbjct: 124 SLVNCFNLPGLPTRHENVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKY 183
Query: 183 AFDYAVKMGRKKVTAVHKANIMKLGDGLFLRSCEEMAKLYPRIQFEKMIVDNCTMQMVSN 362
AF+YA RKKVTAVHKANIMKL DGLFL SC E+AK YP I + ++IVDNC MQ+V+
Sbjct: 184 AFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVAKKYPSITYNEIIVDNCCMQLVAK 243
Query: 363 PNQFDVMVTPNLYGNIVDNXXXXXXXXXXXXXXXXXXXECAVFEQGA 503
P QFDVMVTPNLYGN+V N + AVFEQGA
Sbjct: 244 PEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGA 290
>At4g35650.1 68417.m05062 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
NAD+ dependent isocitrate dehydrogenase subunit 1
[Arabidopsis thaliana] GI:1766046
Length = 368
Score = 198 bits (483), Expect = 2e-51
Identities = 95/167 (56%), Positives = 117/167 (70%)
Frame = +3
Query: 3 NVVHVKSLPNVKCRHHDVDCIIIREQTEGEYSALEHESVPGVVECLKIITAAKSERIAKF 182
++V+ ++P + RH +VD ++IRE TEGEYS LEHE VPGVVE LK+IT SERIA++
Sbjct: 125 SLVNCINVPGLVTRHENVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIARY 184
Query: 183 AFDYAVKMGRKKVTAVHKANIMKLGDGLFLRSCEEMAKLYPRIQFEKMIVDNCTMQMVSN 362
AF+YA RKKVTAVHKANIMKL DGLFL SC E+AK Y I + ++IVDNC MQ+V+
Sbjct: 185 AFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVAKHYSGITYNEIIVDNCCMQLVAK 244
Query: 363 PNQFDVMVTPNLYGNIVDNXXXXXXXXXXXXXXXXXXXECAVFEQGA 503
P QFDVMVTPNLYGN++ N E A+FEQGA
Sbjct: 245 PEQFDVMVTPNLYGNLIANTAAGIAGGTGVMPGGNVGAEHAIFEQGA 291
>At2g17130.2 68415.m01978 isocitrate dehydrogenase subunit 2 / NAD+
isocitrate dehydrogenase subunit 2 nearly identical to
NAD+ dependent isocitrate dehydrogenase subunit 2
[Arabidopsis thaliana] GI:1766048
Length = 363
Score = 196 bits (478), Expect = 8e-51
Identities = 97/167 (58%), Positives = 116/167 (69%)
Frame = +3
Query: 3 NVVHVKSLPNVKCRHHDVDCIIIREQTEGEYSALEHESVPGVVECLKIITAAKSERIAKF 182
++V+ +LP + RH +VD ++IRE TEGEY+ LEHE VPGVVE LK SERIAK+
Sbjct: 124 SLVNCFNLPGLASRHENVDIVVIRENTEGEYAGLEHEVVPGVVESLKFC----SERIAKY 179
Query: 183 AFDYAVKMGRKKVTAVHKANIMKLGDGLFLRSCEEMAKLYPRIQFEKMIVDNCTMQMVSN 362
AF+YA RKKVTAVHKANIMKL DGLFL SC+E+AK YP I + ++IVDNC MQ+V+
Sbjct: 180 AFEYAYLNNRKKVTAVHKANIMKLADGLFLESCQEVAKKYPSIAYNEIIVDNCCMQLVAR 239
Query: 363 PNQFDVMVTPNLYGNIVDNXXXXXXXXXXXXXXXXXXXECAVFEQGA 503
P QFDVMVTPNLYGN+V N E AVFEQGA
Sbjct: 240 PEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGAEYAVFEQGA 286
>At3g09810.1 68416.m01169 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase (NAD+) GB:CAA65502 GI:3021506
[Nicotiana tabacum]
Length = 374
Score = 173 bits (420), Expect = 8e-44
Identities = 82/139 (58%), Positives = 102/139 (73%)
Frame = +3
Query: 3 NVVHVKSLPNVKCRHHDVDCIIIREQTEGEYSALEHESVPGVVECLKIITAAKSERIAKF 182
NV SLP K R+ DVD I IRE TEGEYS LEH+ V GVVE LKIIT S R+A++
Sbjct: 135 NVRPCYSLPGYKTRYDDVDLITIRENTEGEYSGLEHQVVKGVVESLKIITRKASMRVAEY 194
Query: 183 AFDYAVKMGRKKVTAVHKANIMKLGDGLFLRSCEEMAKLYPRIQFEKMIVDNCTMQMVSN 362
AF YA GRKKV+A+HKANIM+ DGLFL+ C+E+A YP I +EK+++DNC M +V N
Sbjct: 195 AFLYAKTHGRKKVSAIHKANIMQKTDGLFLQCCDEVAAKYPEIYYEKVVIDNCCMMLVKN 254
Query: 363 PNQFDVMVTPNLYGNIVDN 419
P FDV+V PNLYG+I+ +
Sbjct: 255 PALFDVLVMPNLYGDIISD 273
>At5g03290.1 68418.m00279 isocitrate dehydrogenase, putative / NAD+
isocitrate dehydrogenase, putative strong similarity to
isocitrate dehydrogenase (NAD+) [Nicotiana tabacum]
GI:3021506
Length = 374
Score = 168 bits (408), Expect = 2e-42
Identities = 79/139 (56%), Positives = 102/139 (73%)
Frame = +3
Query: 3 NVVHVKSLPNVKCRHHDVDCIIIREQTEGEYSALEHESVPGVVECLKIITAAKSERIAKF 182
NV SLP K R+ DVD I IRE TEGEYS LEH+ V GVVE LKIIT S R+A++
Sbjct: 135 NVRPCYSLPGYKTRYDDVDLITIRENTEGEYSGLEHQVVRGVVESLKIITRQASLRVAEY 194
Query: 183 AFDYAVKMGRKKVTAVHKANIMKLGDGLFLRSCEEMAKLYPRIQFEKMIVDNCTMQMVSN 362
AF YA GR++V+A+HKANIM+ DGLFL+ C E+A+ YP I +E++++DNC M +V N
Sbjct: 195 AFLYAKTHGRERVSAIHKANIMQKTDGLFLKCCREVAEKYPEITYEEVVIDNCCMMLVKN 254
Query: 363 PNQFDVMVTPNLYGNIVDN 419
P FDV+V PNLYG+I+ +
Sbjct: 255 PALFDVLVMPNLYGDIISD 273
>At1g32480.1 68414.m04008 isocitrate/isopropylmalate dehydrogenase
family protein similar to NAD+ dependent isocitrate
dehydrogenase subunit 2 [Arabidopsis thaliana]
GI:1766048; contains Pfam profile PF00180 dehydrogenase,
isocitrate/isopropylmalate family
Length = 294
Score = 105 bits (253), Expect = 1e-23
Identities = 51/97 (52%), Positives = 68/97 (70%), Gaps = 2/97 (2%)
Frame = +3
Query: 42 RHHDVDCIIIREQTEGEYSALEHESVPGVVECLKI-ITAAKSERIAKFAFDYAVKMGRKK 218
RH +VD ++IRE TEGEY+ EHE VPGV+E ++ +T S+RIAK+AF+YA RKK
Sbjct: 91 RHENVDIVVIRENTEGEYAGREHEVVPGVIESFQVTMTKFWSDRIAKYAFEYAHFSKRKK 150
Query: 219 VTAVH-KANIMKLGDGLFLRSCEEMAKLYPRIQFEKM 326
VTAVH KL D FL SC+E+AK+YP I + ++
Sbjct: 151 VTAVHNNGKYEKLADAFFLESCQEVAKMYPNITYNEI 187
>At5g14200.1 68418.m01659 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to SP|P29102
3-isopropylmalate dehydrogenase, chloroplast precursor
{Brassica napus}
Length = 409
Score = 70.1 bits (164), Expect = 9e-13
Identities = 44/127 (34%), Positives = 71/127 (55%), Gaps = 5/127 (3%)
Frame = +3
Query: 54 VDCIIIREQTEGEY-----SALEHESVPGVVECLKIITAAKSERIAKFAFDYAVKMGRKK 218
VD +I+RE T G Y +E+ V +I A + +RIA+ AF+ A K R K
Sbjct: 172 VDMMIVRELTGGIYFGEPRGITINENGEEVGVSTEIYAAHEIDRIARVAFETARKR-RGK 230
Query: 219 VTAVHKANIMKLGDGLFLRSCEEMAKLYPRIQFEKMIVDNCTMQMVSNPNQFDVMVTPNL 398
+ +V KAN++ L+ + +A YP ++ M VDN MQ++ +P QFD +VT N+
Sbjct: 231 LCSVDKANVLDASI-LWRKRVTALASEYPDVELSHMYVDNAAMQLIRDPKQFDTIVTNNI 289
Query: 399 YGNIVDN 419
+G+I+ +
Sbjct: 290 FGDILSD 296
>At1g80560.1 68414.m09445 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to
3-ISOPROPYLMALATE DEHYDROGENASE PRECURSOR GB:P29102
SP|P29102 from [Brassica napus]
Length = 405
Score = 69.7 bits (163), Expect = 1e-12
Identities = 43/127 (33%), Positives = 72/127 (56%), Gaps = 5/127 (3%)
Frame = +3
Query: 54 VDCIIIREQTEGEY-----SALEHESVPGVVECLKIITAAKSERIAKFAFDYAVKMGRKK 218
VD +++RE T G Y +E+ V ++ A + +RIA+ AF+ A K R K
Sbjct: 168 VDLMVVRELTGGIYFGEPRGIKTNENGEEVGFNTEVYAAHEIDRIARVAFETARKR-RGK 226
Query: 219 VTAVHKANIMKLGDGLFLRSCEEMAKLYPRIQFEKMIVDNCTMQMVSNPNQFDVMVTPNL 398
+ +V KAN+++ L+ + +A YP ++ M VDN MQ+V +P QFD +VT N+
Sbjct: 227 LCSVDKANVLEASI-LWRKRVTALASEYPDVELSHMYVDNAAMQLVRDPKQFDTIVTNNI 285
Query: 399 YGNIVDN 419
+G+I+ +
Sbjct: 286 FGDILSD 292
>At1g31180.1 68414.m03817 3-isopropylmalate dehydrogenase,
chloroplast, putative strong similarity to SP|P29102
3-isopropylmalate dehydrogenase, chloroplast precursor
{Brassica napus}; EST gb|F14478 comes from this gene
Length = 404
Score = 69.3 bits (162), Expect = 1e-12
Identities = 45/127 (35%), Positives = 71/127 (55%), Gaps = 5/127 (3%)
Frame = +3
Query: 54 VDCIIIREQTEGEY-----SALEHESVPGVVECLKIITAAKSERIAKFAFDYAVKMGRKK 218
VD +I+RE T G Y +E+ V +I A + +RIA+ AF+ A K R K
Sbjct: 169 VDMMIVRELTGGIYFGEPRGITINENGEEVGFNTEIYAAHEIDRIARVAFETARKR-RGK 227
Query: 219 VTAVHKANIMKLGDGLFLRSCEEMAKLYPRIQFEKMIVDNCTMQMVSNPNQFDVMVTPNL 398
+ +V KAN++ L+ + +A YP ++ M VDN MQ+V +P QFD +VT N+
Sbjct: 228 LCSVDKANVLDASI-LWRKRVTALASEYPDVELSHMYVDNAAMQLVRDPKQFDTIVTNNI 286
Query: 399 YGNIVDN 419
+G+I+ +
Sbjct: 287 FGDILSD 293
>At5g15540.1 68418.m01819 expressed protein low similarity to DNA
repair and meiosis protein Rad9 [Coprinus cinereus]
GI:1353390, SP|Q09725 Sister chromatid cohesion protein
mis4 {Schizosaccharomyces pombe}
Length = 1755
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = +2
Query: 302 PQDPVREDDRGQLHDADGIEPEPVRRDGHAQLVRQHSRQ 418
P PV+ + H A IEPEPV+R V HS Q
Sbjct: 146 PSVPVKMQRQTDTHLARSIEPEPVKRVLRPNHVEDHSWQ 184
>At3g13340.1 68416.m01679 WD-40 repeat family protein contains Pfam
profile: PF00400 WD domain, G-beta repeat (3 copies, 1
significant); similar to Trp-Asp repeat protein
(PIR:T40094) [Schizosaccharomyces]
Length = 447
Score = 29.5 bits (63), Expect = 1.5
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Frame = -3
Query: 187 KANFAIRSDFAAVIIFKHSTTPGTDSCSRAEYSPSVC--SLMMMQSTS*CRHFT 32
K +F + F +I KH PG CSR Y + ++ + S HFT
Sbjct: 199 KDDFLVAGGFQGELICKHLDRPGVSFCSRMTYDDNAITNAIEIYNKPSGALHFT 252
>At3g51370.2 68416.m05627 protein phosphatase 2C, putative / PP2C,
putative similar to Ser/Thr protein phosphatase 2C
(PP2C6) (GI:15020818) [Arabidopsis thaliana]; similar to
protein phosphatase 2C (GI:3608412) [Mesembryanthemum
crystallinum]; contains Pfam PF00481 : Protein
phosphatase 2C domain
Length = 294
Score = 28.7 bits (61), Expect = 2.6
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -2
Query: 470 VGSAGDDTGPANKSAGEVVYYVAVQVGRDHHVELVRVRYHLHRAVVHD-HLLELDPGV 300
VG + G A K+ GEV+ A+Q+ +H+V + VR +H D H++ L V
Sbjct: 80 VGDSRAVLGRAMKATGEVI---ALQLSAEHNVSIESVRQEMHSLHPDDSHIVMLKHNV 134
>At3g51370.1 68416.m05626 protein phosphatase 2C, putative / PP2C,
putative similar to Ser/Thr protein phosphatase 2C
(PP2C6) (GI:15020818) [Arabidopsis thaliana]; similar to
protein phosphatase 2C (GI:3608412) [Mesembryanthemum
crystallinum]; contains Pfam PF00481 : Protein
phosphatase 2C domain
Length = 379
Score = 28.7 bits (61), Expect = 2.6
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = -2
Query: 470 VGSAGDDTGPANKSAGEVVYYVAVQVGRDHHVELVRVRYHLHRAVVHD-HLLELDPGV 300
VG + G A K+ GEV+ A+Q+ +H+V + VR +H D H++ L V
Sbjct: 165 VGDSRAVLGRAMKATGEVI---ALQLSAEHNVSIESVRQEMHSLHPDDSHIVMLKHNV 219
>At1g55680.1 68414.m06374 WD-40 repeat family protein contains 2 (1
significant) WD-40 repeats (PF0400); similar to Trp-Asp
repeat protein (PIR:T40094) [Schizosaccharomyces]
Length = 445
Score = 28.3 bits (60), Expect = 3.4
Identities = 15/51 (29%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Frame = -3
Query: 178 FAIRSDFAAVIIFKHSTTPGTDSCSRAEYSPSVC--SLMMMQSTS*CRHFT 32
F + F +I KH PG CSR Y + ++ + S HFT
Sbjct: 200 FLVAGGFQGELICKHLDRPGVSFCSRTTYDDNAITNAIEIYNKPSGALHFT 250
>At1g14550.1 68414.m01729 anionic peroxidase, putative similar to
anionic peroxidase GI:170202 from (Nicotiana sylvestris)
Length = 321
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +3
Query: 120 PGVVECLKIITAAKSERIAKFAFD-YAVKMGRKKVTAVHKA 239
PG+V C II A + +AVK+GR+ TA KA
Sbjct: 116 PGIVSCADIIAVAARDASEYVGGPKWAVKVGRRDSTAAFKA 156
>At4g10080.1 68417.m01649 expressed protein
Length = 325
Score = 27.9 bits (59), Expect = 4.5
Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Frame = -2
Query: 314 LDPGVQLRHLFTTPKEESIT*---FHDVRLVDGGYLLTAHL---DRVIESEFRDTFRFRS 153
+D L H T +SIT ++D G +L+ H DRVIES + D+FR
Sbjct: 1 MDDWELLHHGSDTESTDSITSETKLESSSVIDDGMILSDHFSATDRVIESGYFDSFRVDY 60
Query: 152 G 150
G
Sbjct: 61 G 61
>At3g45780.1 68416.m04953 protein kinase / nonphototropic hypocotyl
protein 1 (NPH1) / phototropin identical to SP|O48963
Nonphototropic hypocotyl protein 1 (EC 2.7.1.37)
(Phototropin) {Arabidopsis thaliana}, cDNA
nonphototropic hypocotyl 1 (NPH1) GI:2832240; contains
Pfam profiles PF00069:Protein kinase domain and
PF00785:PAC motif
Length = 996
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -2
Query: 443 PANKSAGEVVYYVAVQVGRDHHVELVR 363
P GEV Y++ VQ+ HVE VR
Sbjct: 560 PMRDQKGEVQYFIGVQLDGSKHVEPVR 586
>At5g06370.1 68418.m00713 NC domain-containing protein contains Pfam
domain, PF04970: NC domain
Length = 259
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 86 RRILRSGT*VCAWRGRVLEDYHRCEIGTYREIRFRLRGQD 205
R L+ G + +WR + +H +G R I F RGQ+
Sbjct: 10 RSSLKPGDHIYSWRTAYIYAHHGIYVGDDRVIHFTRRGQE 49
>At4g21120.1 68417.m03054 amino acid permease family protein similar
to cationic amino acid transporter-1 [Rattus norvegicus]
GI:1589917; contains Pfam profile PF00324: Amino acid
permease
Length = 594
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 313 WILGYSFAISSQLRRKSPSPSFMMFALWTAVTFLRPIL 200
W+ S AI+ L + SF+ FA+WT + + +L
Sbjct: 520 WLPSASIAINIFLLGSIDTKSFVRFAIWTGILLIYYVL 557
>At4g17690.1 68417.m02642 peroxidase, putative similar to peroxidase
[Spinacia oleracea] gi|1781336|emb|CAA71495
Length = 326
Score = 27.1 bits (57), Expect = 7.9
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Frame = +3
Query: 114 SVPGVVECLKIITAAKSERIAKFAFD-YAVKMGRK 215
S PGVV C I+ A + + Y VK+GRK
Sbjct: 115 SCPGVVSCADILAQATRDLVTMVGGPFYEVKLGRK 149
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,362,900
Number of Sequences: 28952
Number of extensions: 230915
Number of successful extensions: 734
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 714
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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