Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L23
         (425 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01230.1 68418.m00029 FtsJ-like methyltransferase family prot...   202   1e-52
At5g01230.2 68418.m00030 FtsJ-like methyltransferase family prot...   107   2e-24
At4g25730.1 68417.m03703 FtsJ-like methyltransferase family prot...    80   5e-16
At5g13830.1 68418.m01617 FtsJ-like methyltransferase family prot...    53   9e-08
At1g76620.1 68414.m08915 expressed protein contains Pfam profile...    29   1.00 
At1g27750.1 68414.m03391 ubiquitin system component Cue domain-c...    29   1.7  
At3g45650.1 68416.m04931 proton-dependent oligopeptide transport...    27   4.0  
At1g77170.1 68414.m08990 pentatricopeptide (PPR) repeat-containi...    27   4.0  
At5g09470.1 68418.m01096 mitochondrial substrate carrier family ...    27   7.0  
At5g04380.1 68418.m00430 S-adenosyl-L-methionine:carboxyl methyl...    26   9.3  
At4g34320.1 68417.m04878 expressed protein similar to At14a, GI:...    26   9.3  

>At5g01230.1 68418.m00029 FtsJ-like methyltransferase family protein
           contains Pfam profile: PF01728 FtsJ-like
           methyltransferase
          Length = 309

 Score =  202 bits (492), Expect = 1e-52
 Identities = 99/146 (67%), Positives = 117/146 (80%), Gaps = 6/146 (4%)
 Frame = +3

Query: 6   MGKTSKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFDNVLRAVDLCAAPGSWSQVLT 185
           MGK S+DKRDIYYR AKEEGWRARSAFKLLQI+EE+NIF+ V R VDLCAAPGSWSQVL+
Sbjct: 1   MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQVLS 60

Query: 186 KTLRQNAENVEDVK------IVAVDLQAMAALPGVKQIQGDITKLSTACSIIKEFEGLKA 347
           + L   A++  + K      IVA+DLQ MA + GV Q+QGDIT   TA  +I+ F+G KA
Sbjct: 61  RQLYLPAKSSAESKDGDLPLIVAIDLQPMAPIEGVIQVQGDITNARTAEVVIRHFDGCKA 120

Query: 348 DLVVCDGAPDVTGLHDIDEYVQSQLL 425
           DLVVCDGAPDVTGLHD+DE+VQSQL+
Sbjct: 121 DLVVCDGAPDVTGLHDMDEFVQSQLI 146


>At5g01230.2 68418.m00030 FtsJ-like methyltransferase family protein
           contains Pfam profile: PF01728 FtsJ-like
           methyltransferase
          Length = 61

 Score =  107 bits (258), Expect = 2e-24
 Identities = 48/57 (84%), Positives = 52/57 (91%)
 Frame = +3

Query: 6   MGKTSKDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFDNVLRAVDLCAAPGSWSQ 176
           MGK S+DKRDIYYR AKEEGWRARSAFKLLQI+EE+NIF+ V R VDLCAAPGSWSQ
Sbjct: 1   MGKASRDKRDIYYRKAKEEGWRARSAFKLLQIDEEFNIFEGVKRVVDLCAAPGSWSQ 57


>At4g25730.1 68417.m03703 FtsJ-like methyltransferase family protein
           contains Pfam profile: PF01728 FtsJ-like
           methyltransferase
          Length = 821

 Score = 80.2 bits (189), Expect = 5e-16
 Identities = 47/131 (35%), Positives = 76/131 (58%), Gaps = 4/131 (3%)
 Frame = +3

Query: 6   MGKTS-KDKRDIYYRLAKEEGWRARSAFKLLQINEEYNIFDNVLRAVDLCAAPGSWSQVL 182
           MGK   K + D YYRLAKE G+R+R+++KLLQ++ +Y++  +    +DLCAAPG W QV 
Sbjct: 1   MGKVKGKHRLDKYYRLAKERGFRSRASYKLLQLDAKYSLLHSAHAVLDLCAAPGGWMQVA 60

Query: 183 TKTLRQNAENVEDVKIVAVDLQAMAALPGVKQIQGDITKLSTACSI--IKEFEGLKA-DL 353
            + +   +       ++ +DL  +  + G   +  DIT+      I  + E  G+ A +L
Sbjct: 61  VEKVPVGS------LVLGIDLVPILPVRGCVTMTQDITRTECKSKIKQVMEQHGVSAFNL 114

Query: 354 VVCDGAPDVTG 386
           V+ DG+P+V G
Sbjct: 115 VLHDGSPNVGG 125


>At5g13830.1 68418.m01617 FtsJ-like methyltransferase family protein
           contains Pfam profile: PF01728 FtsJ-like
           methyltransferase
          Length = 224

 Score = 52.8 bits (121), Expect = 9e-08
 Identities = 25/54 (46%), Positives = 35/54 (64%)
 Frame = +3

Query: 33  DIYYRLAKEEGWRARSAFKLLQINEEYNIFDNVLRAVDLCAAPGSWSQVLTKTL 194
           D +YR A+  G+ ARSAFKLLQI ++Y +       +DL  APG+W QV  ++L
Sbjct: 8   DFFYREAQRLGYVARSAFKLLQIQKQYKLIKPGSSVLDLGCAPGAWLQVACQSL 61


>At1g76620.1 68414.m08915 expressed protein contains Pfam profile
           PF04784: Protein of unknown function, DUF547
          Length = 527

 Score = 29.5 bits (63), Expect = 1.00
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -2

Query: 415 DCTYSSMSCSPVTSGAPSHTTRSAFRPSN--SFIIEHAVDS 299
           +C YSS S S  TS   S ++ S++ P N  S  ++  VD+
Sbjct: 6   NCAYSSSSSSSSTSSPTSSSSSSSYSPRNRESMFLQSVVDA 46


>At1g27750.1 68414.m03391 ubiquitin system component Cue
            domain-containing protein very low similarity to ASC-1
            complex subunit P100 [Homo sapiens] GI:12061187; contains
            Pfam profile PF02845: CUE domain
          Length = 1973

 Score = 28.7 bits (61), Expect = 1.7
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
 Frame = +3

Query: 36   IYYRLAKEEGWRARSAFKLLQINEEYNIFDNVL----RAVDLCAAPGSWSQVLTKTLRQN 203
            + YR++      A++A  L Q + E  + D  L    + +D+CA  G  +  LTK+L +N
Sbjct: 1291 VLYRISSNRDPGAKAADSLSQKDHEVLLQDKKLLDLPKLLDICAIYGHENAELTKSLIEN 1350

Query: 204  A 206
            A
Sbjct: 1351 A 1351


>At3g45650.1 68416.m04931 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 558

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 295 VISPCICLTPGNAAIACKSTATILTSSTFSAF 200
           ++S CIC+ P  AAIA  S    +   + SAF
Sbjct: 71  IVSGCICMVPAVAAIASDSFFGTIPVISVSAF 102


>At1g77170.1 68414.m08990 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 467

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 16/49 (32%), Positives = 26/49 (53%)
 Frame = -2

Query: 334 SNSFIIEHAVDSFVISPCICLTPGNAAIACKSTATILTSSTFSAFCRRV 188
           +N F I H ++ FV +    +TP +     K  AT+L++ T  A  RR+
Sbjct: 18  TNHFTIFHRLNHFVTTSSSSVTPLSPQDRNKLLATLLSNCTSLARVRRI 66


>At5g09470.1 68418.m01096 mitochondrial substrate carrier family
           protein contains Pfam profile: PF00153 mitochondrial
           carrier protein
          Length = 337

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 23/71 (32%), Positives = 30/71 (42%)
 Frame = -2

Query: 415 DCTYSSMSCSPVTSGAPSHTTRSAFRPSNSFIIEHAVDSFVISPCICLTPGNAAIACKST 236
           D    S+S  P+   APS +TRS   P            F +   I  T G AA+    +
Sbjct: 66  DSLIGSISLLPLHIHAPSSSTRSVMTP------------FAVGAHIVKTEGPAALFSGVS 113

Query: 235 ATILTSSTFSA 203
           ATIL    +SA
Sbjct: 114 ATILRQMLYSA 124


>At5g04380.1 68418.m00430 S-adenosyl-L-methionine:carboxyl
           methyltransferase family protein similar to
           SAM:salicylic acid carboxyl methyltransferase (SAMT)
           [GI:6002712][Clarkia breweri] and to SAM:benzoic acid
           carboxyl methyltransferase
           (BAMT)[GI:9789277][Antirrhinum majus]
          Length = 385

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 266 RQCCHCLQIHSHDLNIFNIFGILSQS 189
           R CCHC  + S+ L      G+LS S
Sbjct: 248 RDCCHCWTLLSNSLRDLVFEGLLSAS 273


>At4g34320.1 68417.m04878 expressed protein similar to At14a,
           GI:11994571 and GI:11994573 [Arabidopsis thaliana]
          Length = 374

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = +3

Query: 54  KEEGWRARSAFKLLQINEEYNIFDNVLRAVDLCAA 158
           K++ W+ +  F+L+   E+Y  F+N L+ +D CAA
Sbjct: 90  KKDIWKNQEMFELV---EDY--FENSLKTLDFCAA 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,315,175
Number of Sequences: 28952
Number of extensions: 148270
Number of successful extensions: 406
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 401
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)