Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L21
         (395 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.8  
SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)                    27   7.3  
SB_10902| Best HMM Match : SH3_1 (HMM E-Value=0)                       26   9.6  
SB_37291| Best HMM Match : rve (HMM E-Value=4.8e-19)                   26   9.6  

>SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = +2

Query: 5    RTSTLSVPEWTTCSRTRLVHLRPPLTPMSLIVMTTLWGEN*ISSRLRPHRWTSTPVGRSS 184
            ++  +S P W   +RT L+H       + L  +  L+G+   SS L  HRW S  VG S 
Sbjct: 1083 QSKLMSTPHWNQSARTSLLH------SVCLRYIEVLFGK---SSSL--HRWGSPKVGESP 1131

Query: 185  IRLS 196
             R +
Sbjct: 1132 TRFA 1135


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 20/59 (33%), Positives = 25/59 (42%)
 Frame = -3

Query: 234 KRETSAGFPRGLNERRIELLPTGVEVQRCGRSLEEIQFSPQRVVITIKDIGVSGGRRCT 58
           K E  A  P  L  R    L   + +  CG   + IQ S  R V T+    VS G +CT
Sbjct: 304 KTEIQASHPTALIRRSCICLMRALALT-CGLHADSIQTSQVRTVSTLLHKLVSAGTKCT 361


>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
          Length = 1771

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 137  RLRPHRWTSTPVGRSSIRLSLS 202
            R++ HRWT TP+   S+ L ++
Sbjct: 959  RVKKHRWTHTPMTGDSLALEIT 980


>SB_10902| Best HMM Match : SH3_1 (HMM E-Value=0)
          Length = 824

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = +2

Query: 137 RLRPHRWTSTPVGRSSIRLSLSPRGNPALVSRFPXYXLNLKQSLI*NLKKLFKTIVLRKS 316
           R+R H W S+ +G  +  L L+     ++      Y  + K+ L  ++KK  K +++  S
Sbjct: 77  RIRLHYWKSSTIGFGAFFLDLAEMSEESIAIALYDYKAHEKEEL--SIKKNDKLVIVDDS 134


>SB_37291| Best HMM Match : rve (HMM E-Value=4.8e-19)
          Length = 214

 Score = 26.2 bits (55), Expect = 9.6
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 204 GLNERRIELLPTGVEVQRCGRSLE 133
           GL ER ++   TGV V   GRSL+
Sbjct: 172 GLAERLVQSFKTGVNVDLTGRSLQ 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,644,687
Number of Sequences: 59808
Number of extensions: 190688
Number of successful extensions: 523
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)