Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L21
         (395 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44500.2 68415.m05532 expressed protein contains Pfam PF03138...    27   6.0  
At2g44500.1 68415.m05533 expressed protein contains Pfam PF03138...    27   6.0  
At4g11860.1 68417.m01887 expressed protein contains Pfam domain ...    26   7.9  

>At2g44500.2 68415.m05532 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as 'axi
           1 protein from Nicotiana tabacum -related'  based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 422

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -3

Query: 207 RGLNERRIELLPTGVEVQRCGRSLEEIQFSPQ 112
           RGL+ R  + LP+ ++  RC  + + ++FSP+
Sbjct: 291 RGLDSRLSKDLPSDLQKLRCKVAFQALRFSPR 322


>At2g44500.1 68415.m05533 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as 'axi
           1 protein from Nicotiana tabacum -related'  based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 573

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = -3

Query: 207 RGLNERRIELLPTGVEVQRCGRSLEEIQFSPQ 112
           RGL+ R  + LP+ ++  RC  + + ++FSP+
Sbjct: 291 RGLDSRLSKDLPSDLQKLRCKVAFQALRFSPR 322


>At4g11860.1 68417.m01887 expressed protein contains Pfam domain
           PF04424: Protein of unknown function (DUF544)
          Length = 682

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
 Frame = -3

Query: 186 IELLP---TGVEVQRCGRSLEEIQFSPQRVVITIKDIGVSGG 70
           I+LLP   TG++V    R +++ +F+P+  +  + DI +  G
Sbjct: 124 IDLLPRLTTGIDVNIKFRRIDDFEFTPECAIFDLLDIPLYHG 165


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,577,019
Number of Sequences: 28952
Number of extensions: 139458
Number of successful extensions: 329
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 329
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)