Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L19
         (603 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)              30   1.7  
SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.7  
SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)                  28   6.7  
SB_48024| Best HMM Match : Band_41 (HMM E-Value=1.3)                   27   8.8  

>SB_15021| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 751

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +1

Query: 175 GATLTKTHIPGFGDKMTAAGKVNLFHNDNHDFSAKAFATKNLPNIPQ-VPNFNTVGAG 345
           G+T   T IPG G    + GK ++  N  H  S  A         P  VP   T GAG
Sbjct: 322 GSTTKTTKIPGPGKIHISTGKPSITDNTKHKTSPSADGKGGKGEEPTIVPEMTTQGAG 379


>SB_43991| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 21/64 (32%), Positives = 31/64 (48%)
 Frame = +2

Query: 320  RTSTLSVPEWTTCSRTRLVHLRPPLTPISLIVMTTLWGEN*ISSRLRPHRWTSTPVGRSS 499
            ++  +S P W   +RT L+H       + L  +  L+G+   SS L  HRW S  VG S 
Sbjct: 1083 QSKLMSTPHWNQSARTSLLH------SVCLRYIEVLFGK---SSSL--HRWGSPKVGESP 1131

Query: 500  IRLS 511
             R +
Sbjct: 1132 TRFA 1135


>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3592

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 20/59 (33%), Positives = 25/59 (42%)
 Frame = -1

Query: 549 KRETSAGFPRGLNERRIELLPTGVEVQRCGRSLEEIQFSPQRVVITIKEIGVSGGRRCT 373
           K E  A  P  L  R    L   + +  CG   + IQ S  R V T+    VS G +CT
Sbjct: 304 KTEIQASHPTALIRRSCICLMRALALT-CGLHADSIQTSQVRTVSTLLHKLVSAGTKCT 361


>SB_22964| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1506

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
 Frame = +1

Query: 208 FGDKMTAAGKVNLFH---NDNHDFSAKAFATKNLPNIPQVPNFNTV 336
           FGDK   A  +  FH   ND  D S  +  T+ + ++  +P + TV
Sbjct: 587 FGDKWIGANTIRAFHHTDNDGIDASENSNLTRIIFDLSTLPMYETV 632


>SB_30460| Best HMM Match : DSPc (HMM E-Value=2.5e-38)
          Length = 550

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 2/90 (2%)
 Frame = +1

Query: 40  GAMVKVPITGNENHRLSALGSVDLTNQMKLGAATAGLAYDNVNGHGATLTKTHIPGFGDK 219
           G  V   +T  E  +L ALG   +T+ +     T  L++ N +   A+  K+ I   G  
Sbjct: 401 GIYVGGAVTAMEEDQLVALG---VTHVLNAAQGTKRLSHVNTD---ASFYKSGIIFHGIP 454

Query: 220 MTAAG--KVNLFHNDNHDFSAKAFATKNLP 303
            T     K+N + ++  DF A A  TKN P
Sbjct: 455 ATDVFMFKLNKYFDEAADFIASAVGTKNCP 484


>SB_48024| Best HMM Match : Band_41 (HMM E-Value=1.3)
          Length = 335

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -1

Query: 426 RVVITIKEIGVSGGRRCTNLVLEHVVHSGTDSVEVRNLRNIWQVFSGECF 277
           R  +T K++    GR+  NLV +  V S  +   + +L+  +++F  EC+
Sbjct: 267 RATLTGKQLWTFRGRQPRNLVEQQSVDSYKEIRNITDLQRAYKLFLKECW 316


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.133    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,588,280
Number of Sequences: 59808
Number of extensions: 430097
Number of successful extensions: 1059
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1059
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)