Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L18
         (628 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37809| Best HMM Match : NADH5_C (HMM E-Value=3)                     29   2.3  
SB_39508| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                28   7.1  

>SB_37809| Best HMM Match : NADH5_C (HMM E-Value=3)
          Length = 1165

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = +2

Query: 20  TNTMEVV----ILYLKAVKAQDRLIQVTTDVMYVVSIRVAVSIMVEALRRLVVARTPAKL 187
           TNT+ +V    IL+L  +     L+ +TT +  VV   +   + +  L  LVV  T   L
Sbjct: 514 TNTLPLVVITTILHLVTITTTLHLVTITTTLPLVVITTILPLVTITTLLPLVVITTILPL 573

Query: 188 IQATTAVML 214
           +  TT + L
Sbjct: 574 VVITTTLPL 582


>SB_39508| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 1814

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -2

Query: 114  ETTYMTSVVTWMSRSCALTAFRYSMTTSMVFVWSTQ 7
            E  Y+T+   + ++  A+  FRYS     V +W+ +
Sbjct: 1283 EIKYLTTTKYYDTQGVAVRHFRYSFVAQQVMIWTVE 1318


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,531,798
Number of Sequences: 59808
Number of extensions: 270196
Number of successful extensions: 569
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 482
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)