Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L16
         (484 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22920.1 68418.m02680 zinc finger (C3HC4-type RING finger) fa...    36   0.019
At5g13590.1 68418.m01572 expressed protein                             31   0.41 
At3g13820.1 68416.m01745 F-box family protein contains Pfam PF00...    29   1.6  
At4g15070.1 68417.m02315 DC1 domain-containing protein contains ...    28   2.9  
At3g60390.1 68416.m06754 homeobox-leucine zipper protein 3 (HAT3...    28   2.9  
At1g79230.1 68414.m09237 mercaptopyruvate sulfurtransferase (MST...    28   3.8  
At4g03970.1 68417.m00561 Ulp1 protease family protein contains P...    27   5.0  
At2g28600.1 68415.m03476 expressed protein                             27   6.6  
At5g36030.1 68418.m04340 Ulp1 protease family protein contains P...    27   8.8  
At4g26610.1 68417.m03835 protein kinase, putative similar to pro...    27   8.8  
At4g19310.1 68417.m02846 Ulp1 protease family protein similar to...    27   8.8  
At1g60850.3 68414.m06850 DNA-directed RNA polymerase, putative i...    27   8.8  
At1g60850.2 68414.m06849 DNA-directed RNA polymerase, putative i...    27   8.8  
At1g60850.1 68414.m06848 DNA-directed RNA polymerase, putative i...    27   8.8  

>At5g22920.1 68418.m02680 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profiles:PF05495 CHY zinc
           finger, PF00097 zinc finger, C3HC4 type (RING finger)
          Length = 291

 Score = 35.5 bits (78), Expect = 0.019
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 2/97 (2%)
 Frame = +3

Query: 165 RHHPPCTVVPSCQRANVLKNNCEYIPPCLHRPRCVNLPLCVP-LSKT-FHCDDTLCNYTG 338
           RH     +   C+    ++ NC     C+ +  C         LSK  +HCD+     TG
Sbjct: 70  RHEVSKVICSLCETEQDVQQNCSNCGVCMGKYFCSKCKFFDDDLSKKQYHCDECGICRTG 129

Query: 339 DDKNTEFFHIPRCKYIPICQHDSSTNDMGQHIEMVSH 449
            ++N  FFH  RC+    C +     D  Q +E   H
Sbjct: 130 GEEN--FFHCKRCR----CCYSKIMEDKHQCVEGAMH 160


>At5g13590.1 68418.m01572 expressed protein 
          Length = 1190

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +3

Query: 234 YIPPCLHRPRCVNLPLCVPLSKTFHCDDTLCNYTGDDKNTEFFHIPRCKYIP 389
           ++PP + R R  + PL  P   TF   D  C ++ +  +      PR  +IP
Sbjct: 737 FVPPRMERDRFHDFPL-EPREYTFRGSDESCKFSRERYHGRIMRSPRLNFIP 787


>At3g13820.1 68416.m01745 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain
          Length = 415

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +3

Query: 231 EYIPPCLHRPRCVNLPLCVPLSKTFHCDDTL 323
           +Y+ PC+++   V++P  + + K FHCD  L
Sbjct: 74  DYVVPCINQ---VDIPRNIEVEKIFHCDGIL 101


>At4g15070.1 68417.m02315 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 889

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
 Frame = +3

Query: 135 PRVIRITKACRHHPPCTVVP-----SCQRANVLKNNCEYI--PPC---LHRPRCVNLPLC 284
           PRV+ + +   H    T  P     +C   ++  ++C +   PPC   +H+ +C++LP  
Sbjct: 501 PRVLSLDQPKWHEHTLTQFPRKTSVTCNVCSLAYSSCPFYICPPCDFVVHQ-KCLSLPRV 559

Query: 285 VPLSKTFH 308
           + +S+ FH
Sbjct: 560 IRISRHFH 567


>At3g60390.1 68416.m06754 homeobox-leucine zipper protein 3 (HAT3) /
           HD-ZIP protein 3 identical to Homeobox-leucine zipper
           protein HAT3 (SP:P46602) [Arabidopsis thaliana]
          Length = 315

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
 Frame = +3

Query: 30  EPPCE-LKPVCQILPDDSNKYCKPKIFKNPSLQKSSPRVIRITKACRHHPPCTVV--PSC 200
           E  CE LK  C+ L D+ N+  + ++ +  +L K SP +    K     PP T+   PSC
Sbjct: 220 EVDCEYLKRCCENLTDE-NRRLQKEVSELRAL-KLSPHLYMHMK-----PPTTLTMCPSC 272

Query: 201 QRANVLKNNCEYIPPCLH 254
           +R  V  ++    PP ++
Sbjct: 273 ERVAVTSSSSSVAPPVMN 290


>At1g79230.1 68414.m09237 mercaptopyruvate sulfurtransferase (MST1)
           (RDH1) identical to mercaptopyruvate sulfurtransferase
           GI:6009981 and thiosulfate sulfurtransferase GI:5834508
           from [Arabidopsis thaliana]
          Length = 379

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = +1

Query: 292 FQKLFIAMTHYAITPGM-TRIQNSFTFLDANI---FPSVNMILQRTTW 423
           F + F+A +H  ITP +  +I N  TFL  ++     S +   + TTW
Sbjct: 6   FSRTFLAASHRLITPSLPQKIFNPATFLSRSLHSQLGSASTAYKSTTW 53


>At4g03970.1 68417.m00561 Ulp1 protease family protein contains Pfam
            profile PF02902: Ulp1 protease family, C-terminal
            catalytic domain; similar to  At5g28170, At1g35110,
            At1g44880, At3g42530, At4g19320, At5g36020, At3g43010,
            At2g10350
          Length = 1043

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +3

Query: 45   LKPVCQILPDDSNKYCKPKIFKNPSLQ 125
            ++PV  I+P    +YCKP+  +N  LQ
Sbjct: 993  IEPVVTIMPYLIQRYCKPECSQNHGLQ 1019


>At2g28600.1 68415.m03476 expressed protein 
          Length = 502

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 245 MPSQTSLCQSTSMCSAFKNFSLR*HIMQLHRG 340
           +PSQ+   Q  S+C A K   +  H + LH+G
Sbjct: 203 VPSQSKASQVRSVCKALKGIGI--HTVSLHQG 232


>At5g36030.1 68418.m04340 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain; simlar to At4g19310, At5g36030
          Length = 355

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 45  LKPVCQILPDDSNKYCKPKIFKNPSLQ 125
           ++PV  +LP    +YC P+  +N  LQ
Sbjct: 256 IEPVVNLLPHLIQRYCTPEFSENHGLQ 282


>At4g26610.1 68417.m03835 protein kinase, putative similar to
           protein kinase G11A [Oryza sativa] SWISS-PROT:P47997
          Length = 506

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 180 CTVVPSCQRANVLKNNCEYIPPCLHRPRCVNLPLCVPLSKT 302
           CTV P+  R+ VL +  +       +P C+  P C+    T
Sbjct: 273 CTVSPTVVRSTVLASEGQKNSGYCAQPACIQQPSCISAPTT 313


>At4g19310.1 68417.m02846 Ulp1 protease family protein similar to
           At5g36030, At1g35110; contains Pfam profile PF02902:
           Ulp1 protease family, C-terminal catalytic domain
          Length = 389

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 45  LKPVCQILPDDSNKYCKPKIFKNPSLQ 125
           ++PV  +LP    +YC P+  +N  LQ
Sbjct: 290 IEPVVNLLPHLIQRYCTPEFSQNHGLQ 316


>At1g60850.3 68414.m06850 DNA-directed RNA polymerase, putative
           identical to RNA polymerase subunit [Arabidopsis
           thaliana] GI:514322; contains Pfam profile PF01000: RNA
           polymerase Rpb3/RpoA insert domain
          Length = 302

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 146 KNNKSMPTSSAVYCGTIVSKGE 211
           KNN    T+SA+Y GT VS  E
Sbjct: 39  KNNAPAHTASAIYSGTYVSSTE 60


>At1g60850.2 68414.m06849 DNA-directed RNA polymerase, putative
           identical to RNA polymerase subunit [Arabidopsis
           thaliana] GI:514322; contains Pfam profile PF01000: RNA
           polymerase Rpb3/RpoA insert domain
          Length = 375

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 146 KNNKSMPTSSAVYCGTIVSKGE 211
           KNN    T+SA+Y GT VS  E
Sbjct: 39  KNNAPAHTASAIYSGTYVSSTE 60


>At1g60850.1 68414.m06848 DNA-directed RNA polymerase, putative
           identical to RNA polymerase subunit [Arabidopsis
           thaliana] GI:514322; contains Pfam profile PF01000: RNA
           polymerase Rpb3/RpoA insert domain
          Length = 375

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 146 KNNKSMPTSSAVYCGTIVSKGE 211
           KNN    T+SA+Y GT VS  E
Sbjct: 39  KNNAPAHTASAIYSGTYVSSTE 60


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,511,195
Number of Sequences: 28952
Number of extensions: 263110
Number of successful extensions: 615
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 614
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)