Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_L15
(683 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 315 2e-86
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 313 8e-86
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 312 2e-85
At5g23575.1 68418.m02766 transmembrane protein, putative similar... 29 2.2
At4g20380.3 68417.m02976 zinc finger protein (LSD1) identical to... 29 2.9
At4g20380.2 68417.m02974 zinc finger protein (LSD1) identical to... 29 2.9
At4g20380.1 68417.m02975 zinc finger protein (LSD1) identical to... 29 2.9
At5g47870.1 68418.m05914 expressed protein 29 3.8
At5g13020.1 68418.m01492 emsy N terminus domain-containing prote... 29 3.8
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ... 29 3.8
At3g19300.1 68416.m02448 protein kinase family protein contains ... 29 3.8
At1g53180.1 68414.m06027 expressed protein 29 3.8
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 28 5.0
At5g13030.1 68418.m01494 expressed protein contains Pfam profile... 28 5.0
At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger) fa... 28 5.0
At2g01600.1 68415.m00084 epsin N-terminal homology (ENTH) domain... 28 5.0
At5g55800.1 68418.m06954 DC1 domain-containing protein contains ... 28 6.6
At5g02360.1 68418.m00159 DC1 domain-containing protein contains ... 27 8.8
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 315 bits (774), Expect = 2e-86
Identities = 145/206 (70%), Positives = 162/206 (78%)
Frame = +1
Query: 13 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 192
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 193 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 372
SSEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 373 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYEREE 552
K GT ARV IGQ ++SVR D EALRRAKFKFPGRQKI VS+KWGFTK+ R E
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDNHGVHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAE 180
Query: 553 FEKLRDAGRFANDGCNVXYRPEHGPL 630
+ KLR R DG N + HGPL
Sbjct: 181 YTKLRAMKRIVPDGVNAKFLSNHGPL 206
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 313 bits (768), Expect = 8e-86
Identities = 145/206 (70%), Positives = 162/206 (78%)
Frame = +1
Query: 13 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 192
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 193 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 372
SSEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 373 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYEREE 552
K GT ARV IGQ ++SVR D EALRRAKFKFPGRQKI VS+KWGFTK+ R +
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAD 180
Query: 553 FEKLRDAGRFANDGCNVXYRPEHGPL 630
F KLR R DG N + HGPL
Sbjct: 181 FTKLRQEKRVVPDGVNAKFLSCHGPL 206
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 312 bits (765), Expect = 2e-85
Identities = 144/206 (69%), Positives = 162/206 (78%)
Frame = +1
Query: 13 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 192
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60
Query: 193 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 372
SSEALEA RI CNKY+VK+ GKD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFG
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 373 KPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQKIYVSKKWGFTKYEREE 552
K GT ARV IGQ ++SVR D EALRRAKFKFPGRQKI VS+KWGFTK+ R +
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDAHGHHAQEALRRAKFKFPGRQKIIVSRKWGFTKFNRAD 180
Query: 553 FEKLRDAGRFANDGCNVXYRPEHGPL 630
+ KLR R DG N + HGPL
Sbjct: 181 YTKLRQEKRIVPDGVNAKFLSCHGPL 206
>At5g23575.1 68418.m02766 transmembrane protein, putative similar to
cleft lip and palate transmembrane protein 1 [Homo
sapiens] GI:4039014; contains Pfam profile PF05602:
Cleft lip and palate transmembrane protein 1 (CLPTM1)
Length = 593
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 423 RHNGLSNTHTRYCALGFPERTTHPSLEPISSSARQHFI 310
++NG H + GFP T P +P++S +R H +
Sbjct: 127 QNNGSLYAHIFFARSGFPIDPTDPEYQPLNSFSRTHAV 164
>At4g20380.3 68417.m02976 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 184
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -2
Query: 286 VVSSGCGTDLY----RSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 143
++ GC T L SS+R +CC L+PA N A + A+I H
Sbjct: 46 IICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 97
>At4g20380.2 68417.m02974 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 189
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -2
Query: 286 VVSSGCGTDLY----RSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 143
++ GC T L SS+R +CC L+PA N A + A+I H
Sbjct: 51 IICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 102
>At4g20380.1 68417.m02975 zinc finger protein (LSD1) identical to
zinc-finger protein Lsd1 [Arabidopsis thaliana]
gi|1872521|gb|AAC49660
Length = 184
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Frame = -2
Query: 286 VVSSGCGTDLY----RSSLRGTCCNRYGLLPAPQNSAARTHQTLSARIVGSH 143
++ GC T L SS+R +CC L+PA N A + A+I H
Sbjct: 46 IICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGH 97
>At5g47870.1 68418.m05914 expressed protein
Length = 199
Score = 28.7 bits (61), Expect = 3.8
Identities = 20/73 (27%), Positives = 30/73 (41%)
Frame = +1
Query: 274 RMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQ 453
R++L PF + +N+ + C+G G+ G + V PI SS
Sbjct: 23 RIKLSPFRTVAVNRGVRCSGG-----GVGGGDAGKKKAVPNSNYVVPIDKFSSSSSITRP 77
Query: 454 VIEALRRAKFKFP 492
+IE LR K P
Sbjct: 78 LIEILRDLNKKIP 90
>At5g13020.1 68418.m01492 emsy N terminus domain-containing protein
/ ENT domain-containing protein contains Pfam profile
PF03735: ENT domain
Length = 397
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = -3
Query: 486 LELSTTQSLNDLCLPTVT*AYRHNGLSNTHTRYCALGFPERTTHPSLEPISSSARQ 319
L+ S Q ++D P V+ + + S + A+G P + HPS++P SS+ R+
Sbjct: 123 LQSSVPQLVHDAPSPAVSGSRKKQKTSQSIASL-AMGPPSPSLHPSMQPSSSALRR 177
>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 989
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = +1
Query: 196 SEALEAGRIC--CNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSC 327
S+A+ G C C+ + K CG+ I+ HP H +++ C
Sbjct: 65 SKAVSVGYYCKSCDFFAHKKCGESSEFIQHPSHPNHTLQLRSSEGC 110
>At3g19300.1 68416.m02448 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 663
Score = 28.7 bits (61), Expect = 3.8
Identities = 23/98 (23%), Positives = 41/98 (41%)
Frame = -3
Query: 669 YTLLVHFGFPPDIEGSMLWAVLDVASIVSKTSSIT*LLKFLTFVLGKAPLLRYIDLLATR 490
+ LL G P D S V AS+ S + +++ + + + RY + A
Sbjct: 22 FPLLTEAGCPLDFTSSNFTLV---ASVCSNNTERAKCCRYMNAFVAIS-VARYANYTA-- 75
Query: 489 ELELSTTQSLNDLCLPTVT*AYRHNGLSNTHTRYCALG 376
+L T L ++C+ T++ G+ T +C LG
Sbjct: 76 --DLGVTSDLTEICITTISRTMELYGIPRNATIFCGLG 111
>At1g53180.1 68414.m06027 expressed protein
Length = 358
Score = 28.7 bits (61), Expect = 3.8
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +1
Query: 4 ENTMGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGK 126
EN RR +R RYC + PYP S P+ K+ D+GK
Sbjct: 22 ENLFTRR-SRGLRYCHSDPYPSSSSTSTSPE-KMGDSDIGK 60
>At5g24280.1 68418.m02856 expressed protein ; expression supported by
MPSS
Length = 1634
Score = 28.3 bits (60), Expect = 5.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 172 SDEYEQLSSEALEAGRICCNKYLV 243
SDEY + SEA GR N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454
>At5g13030.1 68418.m01494 expressed protein contains Pfam profile
PF02696: Uncharacterized ACR, YdiU/UPF0061 family
Length = 633
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 463 ALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKL 564
A+ R KF + +SKK G TKY +E KL
Sbjct: 455 AMERYGDKFMDEYQAIMSKKLGLTKYNKEVISKL 488
>At5g10650.1 68418.m01233 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 525
Score = 28.3 bits (60), Expect = 5.0
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = -2
Query: 136 SLSFCPSRKYGSLGQAH 86
SLSFCPS Y S G+ H
Sbjct: 327 SLSFCPSNIYSSTGRVH 343
>At2g01600.1 68415.m00084 epsin N-terminal homology (ENTH)
domain-containing protein contains Pfam PF01417: ENTH
domain. ENTH (Epsin N-terminal homology) domain; similar
to clathrin assembly protein AP180 (GI:6492344) [Xenopus
laevis]
Length = 571
Score = 28.3 bits (60), Expect = 5.0
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -3
Query: 360 THPSLEPISSSARQHFIDADDMEGV*S-HPDVELIFTA-VLYEVLVATD 220
T PS P S+ Q+FID DD+ G+ + PD +I L +V+TD
Sbjct: 358 TEPSPPPPPSANAQNFIDTDDLWGLNTGAPDTSVIEDQNALALAIVSTD 406
>At5g55800.1 68418.m06954 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 578
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = +1
Query: 220 ICCNKYLVKNCGKDQFHIRMRLHPFHVIRI 309
+ C K K C + F I HPFH +R+
Sbjct: 107 LICEKMFHKECVESPFEIIHPSHPFHSLRL 136
>At5g02360.1 68418.m00159 DC1 domain-containing protein contains
Pfam profile PF03107: DC1 domain
Length = 342
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 2/60 (3%)
Frame = +1
Query: 124 KKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVKNCG--KDQFHIRMRLHPFH 297
KK + PL + +++ EYE GR CCN ++CG + ++ + P+H
Sbjct: 255 KKHHALRPHPLTLTVITSEYEG------NVGRFCCNACQRESCGFVYEDLGAKIGVLPYH 308
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,020,035
Number of Sequences: 28952
Number of extensions: 347688
Number of successful extensions: 919
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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