Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_L14
(331 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37) 124 1e-29
SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34) 28 1.6
SB_42614| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.1
SB_42285| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.8
SB_36167| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.8
SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026) 27 3.7
SB_59051| Best HMM Match : ABC_tran (HMM E-Value=2.4e-41) 27 3.7
SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16) 27 3.7
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0) 27 4.9
SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4) 26 6.5
SB_20451| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
SB_2092| Best HMM Match : RVT_1 (HMM E-Value=0.00047) 26 6.5
SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_14859| Best HMM Match : SEA (HMM E-Value=0.01) 26 8.5
SB_10789| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_38601| Best HMM Match : MMR_HSR1 (HMM E-Value=0.055) 26 8.5
SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
Length = 261
Score = 124 bits (300), Expect = 1e-29
Identities = 58/77 (75%), Positives = 65/77 (84%)
Frame = +2
Query: 101 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAIKDHLETNPALEKL 280
Q LDEYPK F+VG DNVGS+QMQ IR SLRG VLMGKN+M+RKAI+ HLE NP LEKL
Sbjct: 1 QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDLEKL 60
Query: 281 LPHIKGNVGFVFTRGDL 331
LPHIKGN+GFVFT+ DL
Sbjct: 61 LPHIKGNIGFVFTKEDL 77
>SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 408
Score = 28.7 bits (61), Expect = 1.2
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 172 DPYFIAWSQHCAHGQKQHDEESHQGPS*NKSSSRKTASS 288
D Y QH H Q HD ++H+ + +++++R A S
Sbjct: 144 DQYTTQPDQHMTHNQIDHDTQTHRPTTRSQTNTRHAARS 182
>SB_13374| Best HMM Match : Cornifin (HMM E-Value=0.34)
Length = 1197
Score = 28.3 bits (60), Expect = 1.6
Identities = 20/88 (22%), Positives = 40/88 (45%)
Frame = +2
Query: 38 NPRWVGRTRLPGSPITSFRIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGK 217
+PR GR PG+P R++ + ++ + D G + + I++ +V +
Sbjct: 72 HPRGPGRPSSPGNPPRPNRVVTICTKHSDKRQLSLDMAG---INETYITILKRYMVEIND 128
Query: 218 NSMMRKAIKDHLETNPALEKLLPHIKGN 301
+ RK +K L+ KL+P ++ N
Sbjct: 129 SKNYRKYLKQLLQKRLPNVKLVPSVRKN 156
>SB_42614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 581
Score = 27.9 bits (59), Expect = 2.1
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 2 LSLNFSEV-PTSLNPRWVGRTRLPGSPITSFRIIQLLDEYPKCFIVGADNVGSQQMQQ 172
LS+ F V P S+N W+ + PG + +L E K ++ A +VG + +++
Sbjct: 43 LSMRFLVVIPPSINTGWLNPFKSPGEDLLCLSTGKLASEEVKRDLMSATDVGEKALRK 100
>SB_42285| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1153
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -2
Query: 144 SAPTMKHFGYSSNSWMILNEVIGLPGSLVLPT--HLGLSEV 28
+ PT++HFG+S + + N ++G G V PT L SEV
Sbjct: 145 TCPTLEHFGFSGFTGVTANGLLGFLGK-VSPTLASLDCSEV 184
>SB_36167| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = +1
Query: 76 SNYFVQNHPT-VGRIPKMFHSGCGQCRLATDATDPYFIAWSQHCAHGQK 219
SN +P V R P+ F + CG ++A P I S+ HG+K
Sbjct: 90 SNKVALGNPCGVTRDPRWFMALCGIVPYVSEAQSPTIITTSKPIVHGEK 138
>SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
Length = 779
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 25 PYFTQSKMGREDKATWKSNYFVQNHPTVGRIPKMFHSGCGQC 150
PY + + + D T Y V N P ++P M +GC C
Sbjct: 526 PYISLTATIQPDDYTALGFYPVTNKPKSAQLPAMADTGCQSC 567
>SB_59051| Best HMM Match : ABC_tran (HMM E-Value=2.4e-41)
Length = 474
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/56 (23%), Positives = 23/56 (41%)
Frame = +1
Query: 52 REDKATWKSNYFVQNHPTVGRIPKMFHSGCGQCRLATDATDPYFIAWSQHCAHGQK 219
R DK W++ V P V +PK + +C A + +A ++ + K
Sbjct: 166 RTDKEVWEALDKVHLKPWVETLPKQLYQDLAECSAAFSTGEKQLVALARALVYNTK 221
>SB_463| Best HMM Match : RRM_1 (HMM E-Value=3.3e-16)
Length = 842
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +1
Query: 25 PYFTQSKMGREDKATWKSNYFVQNHPTVGRIPKMFHSGCGQC 150
PY + + + D T Y V N P ++P M +GC C
Sbjct: 574 PYISLTATIQPDDYTALGFYPVTNKPKSAQLPAMADTGCQSC 615
>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
Length = 6074
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/37 (35%), Positives = 14/37 (37%)
Frame = +1
Query: 70 WKSNYFVQNHPTVGRIPKMFHSGCGQCRLATDATDPY 180
W NY + P P SG LATD D Y
Sbjct: 5909 WAQNYSSSSSPWAPSSPASVRSGTYSSSLATDILDTY 5945
>SB_57588| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
Length = 756
Score = 26.2 bits (55), Expect = 6.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 285 GSSFSRAGFVSRWSLMAFLIMLFL 214
GSS SR+ + W L+ F+ LFL
Sbjct: 591 GSSASRSSILHTWLLLTFVTSLFL 614
>SB_20451| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1328
Score = 26.2 bits (55), Expect = 6.5
Identities = 15/41 (36%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Frame = +1
Query: 193 SQHCAHGQKQHDEESHQGPS*NKS-SSRKTASSHQGKCRLC 312
S H HG ES + P + A QGKCRLC
Sbjct: 296 STHNTHGAANDQLESGEKPDVKADVKAGYEARDKQGKCRLC 336
>SB_2092| Best HMM Match : RVT_1 (HMM E-Value=0.00047)
Length = 712
Score = 26.2 bits (55), Expect = 6.5
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -1
Query: 253 KMVLDGFPHHAVFAHEHNAVTTQ*NTDLLHLLRAYIVRT 137
++ L G P +V+ + + ++T +DLL +R +VRT
Sbjct: 521 RLRLPGIPWFSVWRNTYGGLSTNWESDLLWKIRHRVVRT 559
>SB_27532| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 649
Score = 25.8 bits (54), Expect = 8.5
Identities = 9/19 (47%), Positives = 10/19 (52%)
Frame = -3
Query: 200 CCDHAMKYGSVASVASLHC 144
CCDH S A V +HC
Sbjct: 104 CCDHCQPLISAAEVKCVHC 122
>SB_14859| Best HMM Match : SEA (HMM E-Value=0.01)
Length = 1776
Score = 25.8 bits (54), Expect = 8.5
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +2
Query: 140 ADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAIKDHLETNPALEKLLPHIKGNV 304
+ +VGS + QQ+R + S V G+N +R +K T P L + L H +V
Sbjct: 1309 SSHVGSGRNQQVRKHVEVSSHVGSGRNQQVRHPLK---STCPLLYRDLDHAVDHV 1360
>SB_10789| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 207
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/44 (29%), Positives = 17/44 (38%)
Frame = +1
Query: 118 PKMFHSGCGQCRLATDATDPYFIAWSQHCAHGQKQHDEESHQGP 249
P F L T+ + YF S+ + HD ES GP
Sbjct: 54 PDRFTYKSASSGLGTNDSSSYFEDTSEQSTDSHEDHDSESSTGP 97
>SB_38601| Best HMM Match : MMR_HSR1 (HMM E-Value=0.055)
Length = 882
Score = 25.8 bits (54), Expect = 8.5
Identities = 13/44 (29%), Positives = 17/44 (38%)
Frame = +1
Query: 118 PKMFHSGCGQCRLATDATDPYFIAWSQHCAHGQKQHDEESHQGP 249
P F L T+ + YF S+ + HD ES GP
Sbjct: 729 PDRFTYKSASSGLGTNDSSSYFEDTSEQSTDSHEDHDSESSTGP 772
>SB_25385| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 25.8 bits (54), Expect = 8.5
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Frame = -1
Query: 181 NTDLLHLLR---AYIVRTHYETFWVFVQQLDDSERSN-WTSR*PCPPYPSWIE*SRD 23
N +++ L R I+RT T + F+QQ+ S R + C P + E SRD
Sbjct: 205 NLEMMQLRRKPKCAIIRTKSRTLFYFLQQIVSSRRKKIHVRQGACDPQQFFCETSRD 261
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,704,213
Number of Sequences: 59808
Number of extensions: 232836
Number of successful extensions: 691
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 463065397
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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