Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0002_L14
(331 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)... 96 4e-21
At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)... 96 4e-21
At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A) 93 4e-20
At5g48375.1 68418.m05977 glycosyl hydrolase family 1 protein con... 27 4.0
At5g39490.1 68418.m04782 F-box family protein contains Pfam:PF00... 27 4.0
At5g39480.1 68418.m04781 F-box family protein contains Pfam:PF00... 27 4.0
At5g09540.1 68418.m01105 DNAJ heat shock N-terminal domain-conta... 27 4.0
At2g19590.1 68415.m02288 1-aminocyclopropane-1-carboxylate oxida... 27 4.0
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 27 4.0
At5g04930.1 68418.m00521 phospholipid-transporting ATPase 1 / am... 26 5.3
At5g57840.1 68418.m07233 transferase family protein similar to a... 26 7.0
At2g40955.1 68415.m05057 hypothetical protein 26 7.0
At1g56160.1 68414.m06452 myb family transcription factor (MYB72)... 26 7.0
At4g02110.1 68417.m00282 BRCT domain-containing protein contains... 25 9.3
At2g25050.1 68415.m02996 formin homology 2 domain-containing pro... 25 9.3
>At3g11250.1 68416.m01368 60S acidic ribosomal protein P0 (RPP0C)
similar to 60S acidic ribosomal protein P0 GI:2088654
[Arabidopsis thaliana]
Length = 323
Score = 96.3 bits (229), Expect = 4e-21
Identities = 44/82 (53%), Positives = 62/82 (75%), Gaps = 2/82 (2%)
Frame = +2
Query: 92 RIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAIKDHLET--NP 265
++ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKN+MM+++++ H E N
Sbjct: 16 KLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENSGNT 75
Query: 266 ALEKLLPHIKGNVGFVFTRGDL 331
A+ LLP ++GNVG +FT+GDL
Sbjct: 76 AILNLLPLLQGNVGLIFTKGDL 97
>At3g09200.1 68416.m01094 60S acidic ribosomal protein P0 (RPP0B)
similar to putative 60S acidic ribosomal protein P0
GB:P50346 [Glycine max]
Length = 320
Score = 96.3 bits (229), Expect = 4e-21
Identities = 44/82 (53%), Positives = 62/82 (75%), Gaps = 2/82 (2%)
Frame = +2
Query: 92 RIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAIKDHLET--NP 265
++ QL+DEY + +V ADNVGS Q+Q IR LRG S+VLMGKN+MM+++++ H E N
Sbjct: 16 KLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENTGNT 75
Query: 266 ALEKLLPHIKGNVGFVFTRGDL 331
A+ LLP ++GNVG +FT+GDL
Sbjct: 76 AILNLLPLLQGNVGLIFTKGDL 97
>At2g40010.1 68415.m04916 60S acidic ribosomal protein P0 (RPP0A)
Length = 317
Score = 93.1 bits (221), Expect = 4e-20
Identities = 43/82 (52%), Positives = 61/82 (74%), Gaps = 2/82 (2%)
Frame = +2
Query: 92 RIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAIKDHLET--NP 265
++ QLL+EY + +V ADNVGS Q+Q IR LRG S+VLMGKN+MM+++++ H + N
Sbjct: 17 KLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHADKTGNQ 76
Query: 266 ALEKLLPHIKGNVGFVFTRGDL 331
A LLP ++GNVG +FT+GDL
Sbjct: 77 AFLSLLPLLQGNVGLIFTKGDL 98
>At5g48375.1 68418.m05977 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
identical to thioglucosidase (GI:871992) [Arabidopsis
thaliana]
Length = 439
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 154 LATDATDPYFIAWSQHCAHGQKQH 225
+ TDA +PY +A +Q AH + H
Sbjct: 202 MGTDAPEPYIVAHNQLLAHAKVVH 225
>At5g39490.1 68418.m04782 F-box family protein contains Pfam:PF00646
F-box domain ; similar to SKP1 interacting partner 2
(SKIP2) TIGR_Ath1:At5g67250
Length = 566
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 23 VPTSLNPRWVGRTRLPGSPITSFRIIQLLDEYPKCFIVGADNVGS 157
+P + P W+ R+ SP+ F II D F+ G D GS
Sbjct: 120 IPQKVAPSWIQEDRVKWSPV--FEIICGFDGSNGFFLHGRDKEGS 162
>At5g39480.1 68418.m04781 F-box family protein contains Pfam:PF00646
F-box domain ; similar to SKP1 interacting partner 2
(SKIP2) TIGR_Ath1:At5g67250
Length = 568
Score = 26.6 bits (56), Expect = 4.0
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = +2
Query: 23 VPTSLNPRWVGRTRLPGSPITSFRIIQLLDEYPKCFIVGADNVGS 157
+P + P W+ R+ SP+ F II D F+ G D GS
Sbjct: 121 IPQKVAPSWIQEDRVKWSPV--FEIICGFDGSNGFFLHGRDKEGS 163
>At5g09540.1 68418.m01105 DNAJ heat shock N-terminal
domain-containing protein low similarity to AHM1
[Triticum aestivum] GI:6691467; contains Pfam profile
PF00226 DnaJ domain
Length = 280
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = -2
Query: 111 SNSWMILNEVIGLPGSLVLPTHLGLSEVGTSEKFKD 4
S++W +L++ P + L LS+ G SEKF+D
Sbjct: 121 SDAWYVLSDP---PRKSIYDRELQLSQTGQSEKFQD 153
>At2g19590.1 68415.m02288 1-aminocyclopropane-1-carboxylate oxidase,
putative / ACC oxidase, putative similar to ACC oxidase
[Cucumis melo][GI:1183898]
Length = 310
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +1
Query: 10 KFLRSPYFTQSKMGREDKATWKSNYFVQNHPT 105
KF +S G+ A W+S++F+ + PT
Sbjct: 71 KFYQSEMVKALSEGKTSDADWESSFFISHKPT 102
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/50 (26%), Positives = 26/50 (52%)
Frame = +2
Query: 164 MQQIRISLRGHSIVLMGKNSMMRKAIKDHLETNPALEKLLPHIKGNVGFV 313
+++I++ +G+ +L+G N+ + K K L K+ K +GFV
Sbjct: 124 IERIKVLFKGYRDLLLGFNTFLPKGYKITLLPEEEKPKIRVDFKDAIGFV 173
>At5g04930.1 68418.m00521 phospholipid-transporting ATPase 1 /
aminophospholipid flippase 1 / magnesium-ATPase 1 (ALA1)
nearly identical to SP|P98204 Phospholipid-transporting
ATPase 1 (EC 3.6.3.1) (Aminophospholipid flippase 1)
{Arabidopsis thaliana}; contains InterPro accession
IPR005834: Haloacid dehalogenase-like hydrolase
Length = 1158
Score = 26.2 bits (55), Expect = 5.3
Identities = 12/47 (25%), Positives = 24/47 (51%)
Frame = +2
Query: 122 KCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNSMMRKAIKDHLETN 262
+ +VG + + +Q S S L+G+ ++RK + ++ETN
Sbjct: 664 RTLVVGMRELNDSEFEQWHSSFEAASTALIGRAGLLRK-VAGNIETN 709
>At5g57840.1 68418.m07233 transferase family protein similar to
anthranilate N-hydroxycinnamoyl/benzoyltransferase from
Dianthus caryophyllus [gi:2239091]
Length = 443
Score = 25.8 bits (54), Expect = 7.0
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +2
Query: 188 RGHSIVLMGKNSMMRKAIKDHLETNPALEKLLPHIKGNVGF 310
R H + N +R AI D+LE +P L++L+P +GN F
Sbjct: 327 RVHREIRKMDNEYLRSAI-DYLERHPDLDQLVPG-EGNTIF 365
>At2g40955.1 68415.m05057 hypothetical protein
Length = 679
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 239 WLSSSCCFCP*AQCCDHAMKY 177
WL+ C FC + DH MK+
Sbjct: 16 WLNGLCVFCKEPEAPDHHMKH 36
>At1g56160.1 68414.m06452 myb family transcription factor (MYB72)
contains Pfam profile: PF00249 myb-like DNA-binding
domain; identical to cDNA putative transcription factor
(MYB72) mRNA, partial cds GI:3941501
Length = 296
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 229 EESHQGPS*NKSSSRKTASSHQGKC 303
EE H G N+S + T+S HQG+C
Sbjct: 148 EEIHSGL--NESQNSATSSHHQGEC 170
>At4g02110.1 68417.m00282 BRCT domain-containing protein contains Pfam
domain, PF00533: BRCA1 C Terminus (BRCT) domain
Length = 1293
Score = 25.4 bits (53), Expect = 9.3
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +2
Query: 74 SPITSFRIIQLLDEYPKCFIVGADNVGSQQMQQIRISLRG 193
+P+ S ++ Q + PK FIV + QQI L+G
Sbjct: 1046 NPLASRKVFQDQEHEPKFFIVSGPRSQRNEYQQIIRRLKG 1085
>At2g25050.1 68415.m02996 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02128
Length = 1111
Score = 25.4 bits (53), Expect = 9.3
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = -2
Query: 153 PTLSAPTMKHFGYSSNSWMILNE 85
P L+ T+ HF S+ SW++L++
Sbjct: 63 PLLTMETVHHFLKSAESWLLLSQ 85
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,273,894
Number of Sequences: 28952
Number of extensions: 166993
Number of successful extensions: 523
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 380568784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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