Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L13
         (691 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)             212   2e-55
SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)                76   2e-14
SB_36074| Best HMM Match : DUF885 (HMM E-Value=0.23)                   30   2.0  
SB_27442| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.0  
SB_55405| Best HMM Match : Bromodomain (HMM E-Value=5.5e-16)           30   2.0  
SB_4351| Best HMM Match : zf-B_box (HMM E-Value=1.3e-25)               30   2.0  
SB_13066| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_7500| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.7  
SB_7987| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.2  
SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06)                 28   6.2  
SB_40494| Best HMM Match : fn3 (HMM E-Value=9.2e-21)                   28   6.2  
SB_6203| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.2  
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   8.2  
SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11)                 28   8.2  

>SB_30637| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1137

 Score =  212 bits (518), Expect = 2e-55
 Identities = 103/181 (56%), Positives = 114/181 (62%), Gaps = 1/181 (0%)
 Frame = +3

Query: 3    KPDNTYEVLIDNEKVESGELEADWDFLPPKKIKDPEAKKPEDWXXXXXXXXXXXXXXXXX 182
            +PDNTYEV IDNEKVESGELE DWDFLPPK IKDPEAKKPEDW                 
Sbjct: 860  RPDNTYEVKIDNEKVESGELEKDWDFLPPKTIKDPEAKKPEDWDDKKMIDDPEDKKPEDW 919

Query: 183  XXXXHIPDPDASKXXXXXXXXXXXXXXXXIDNPDYKGVWAPKQIDNPAYKGPWIHPEIDN 362
                +IPDPDA K                IDNP+YKG W PKQIDNP YKG W+HPEIDN
Sbjct: 920  DKPQNIPDPDAKKPEDWDDEIDGEWEPPMIDNPEYKGEWKPKQIDNPNYKGEWVHPEIDN 979

Query: 363  PEYTPDSNLYKRDEICSVGLDLWQVKSGTIFNNFLFTDDPALAKE-KGEIIKKMQEGEKK 539
            PEY  D  LY   +I ++G DLWQVKSGTIF+N L TD    A++   E   K +EGEKK
Sbjct: 980  PEYKADDKLYMYKDIGAIGFDLWQVKSGTIFDNVLVTDSVEHAEQFAKETFDKTKEGEKK 1039

Query: 540  M 542
            M
Sbjct: 1040 M 1040


>SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)
          Length = 1086

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 59/190 (31%), Positives = 76/190 (40%), Gaps = 27/190 (14%)
 Frame = +3

Query: 3   KPDNTYEVLIDNEKVESGELEADWD--FLPP-----------------KKIKDPEAKKPE 125
           +PDNT+EV ID E V  G L  D      PP                 +KI DP+A+KP+
Sbjct: 99  RPDNTFEVFIDQESVNKGSLLEDMTPPVNPPAEIEDPDDKRPEDWDEREKIPDPDAEKPD 158

Query: 126 DWXXXXXXXXXXXXXXX----XXXXXXHIPDPDASKXXXXXXXXXXXXXXXXIDNPDYK- 290
           DW                         ++PDP+  K                I NP  + 
Sbjct: 159 DWDEDAPVKIPDTNAKKPEGWLDDEPEYVPDPNGIKPEDWDDEEDGEWEAPQIANPKCEK 218

Query: 291 ---GVWAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEICSVGLDLWQVKSGTIFNN 461
              G W P   DNP YKG W  P IDNP Y              VGL+LW + S  +F+N
Sbjct: 219 VGCGEWKPPMADNPEYKGKWSAPLIDNPNYK-----------VGVGLELWSMTSDILFDN 267

Query: 462 FLFTDDPALA 491
            + T+D A+A
Sbjct: 268 VIVTNDKAVA 277


>SB_36074| Best HMM Match : DUF885 (HMM E-Value=0.23)
          Length = 689

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 297 WAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEICSVGLDLWQVK 440
           W  KQ+   A++  W     +NP  + D+NLY+ + +   G+  WQV+
Sbjct: 640 WLDKQMSFIAFQEGWAL-YAENPILSHDTNLYEDNVLQRYGMLKWQVR 686


>SB_27442| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 165

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +3

Query: 39  EKVESGELEADWD-FLPPKKIKDPEAKKPEDW 131
           EKV +GE+  ++D  LPP++ K PE+  PE +
Sbjct: 48  EKVWTGEVWREFDPLLPPRRQKGPESLDPETY 79


>SB_55405| Best HMM Match : Bromodomain (HMM E-Value=5.5e-16)
          Length = 657

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 58  N*KPTGTSYLRRRSRIQKQRNLKIGTTNPQS-PIRKTRNPRTG 183
           N  P   SYLRR S +++  +   GTTNP    ++K +   TG
Sbjct: 444 NGSPVQNSYLRRPSPLKRSLSSHEGTTNPLGVRVKKEKTDSTG 486


>SB_4351| Best HMM Match : zf-B_box (HMM E-Value=1.3e-25)
          Length = 662

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +1

Query: 58  N*KPTGTSYLRRRSRIQKQRNLKIGTTNPQS-PIRKTRNPRTG 183
           N  P   SYLRR S +++  +   GTTNP    ++K +   TG
Sbjct: 607 NGSPVQNSYLRRPSPLKRSLSSHEGTTNPLGVRVKKEKTDSTG 649


>SB_13066| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 865

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = +1

Query: 364 LNTLQTRTCTSVMRYALSVSTYGRSSLEPSLI 459
           L TL  R    +MR ALS+S+  RS+LEP ++
Sbjct: 688 LFTLTRRFAEDLMRKALSLSSTSRSTLEPRVL 719


>SB_7500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 605

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/48 (31%), Positives = 21/48 (43%)
 Frame = +3

Query: 297 WAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRDEICSVGLDLWQVK 440
           W  K    P YK   I  +  +P YTP    Y    + ++  DL+Q K
Sbjct: 478 WVVKVCGEPPYKSCSIASKQPSPHYTPQGYQYLSKLVATLVRDLFQRK 525


>SB_7987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 466

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 24/72 (33%), Positives = 36/72 (50%)
 Frame = +1

Query: 262 HL*STTPTTRASGHLNRLTTLHTRDHGSTRRLTILNTLQTRTCTSVMRYALSVSTYGRSS 441
           H+  T P TR S  L +  T   R+  +  + T L+ ++ R CT +M+  LSVS     S
Sbjct: 234 HVWITLPHTRQST-LPQPATTTVREILNAGKDTPLSQVEERICTQLMKRKLSVS----QS 288

Query: 442 LEPSLITSFSPM 477
           L   L T  +P+
Sbjct: 289 LPVLLFTGGTPL 300


>SB_48071| Best HMM Match : AAA_5 (HMM E-Value=3.1e-06)
          Length = 1532

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 384 NLYKRDEICSVGLDLWQVKSGTIFNNFLFTDDPALAKEKGE 506
           +L ++ EIC   L  +  K   +F  F F  DPAL +  G+
Sbjct: 634 HLLEQLEICQKSLSGYLEKKRLLFPRFFFVSDPALLEILGQ 674


>SB_40494| Best HMM Match : fn3 (HMM E-Value=9.2e-21)
          Length = 600

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -2

Query: 204 PECAQVCPSPRVSCLPDRGLWVCRPNLQVSLLLDP 100
           P    +CP+P    +P   LW C P    +LL  P
Sbjct: 561 PPATALCPTPFYGPVPHPLLWPCAPPPATALLCGP 595


>SB_6203| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -3

Query: 338 WSLVCRVVNLFRCPDALVVGVVDHRWFPLSIHLIIP 231
           W+   + + +   P A+ V  +  +W+PLS  ++IP
Sbjct: 303 WTGQAQTIGMLSIPVAVAVKKLLPQWYPLSYQIVIP 338


>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2982

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = +1

Query: 85   LRRRSRI--QKQRNLKIGTTNPQSPIR--KTRNPRTGTNLSTFRTLMPVSLKIGMMRWME 252
            LRR S I   ++++   G ++  SPIR  KTR  R+GT  S        S+K G  R  E
Sbjct: 969  LRRTSSIGTPRKKSFARGHSSVASPIRDKKTRRERSGTRPSPGERTGESSVKTGESRTFE 1028

Query: 253  S 255
            +
Sbjct: 1029 A 1029


>SB_6444| Best HMM Match : CRAM_rpt (HMM E-Value=3e-11)
          Length = 2297

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 288 KGVWAPKQIDNPAYKGPWIHPEIDNPEYTPDSNLYKRD 401
           KG       D P +K P +  EID P+     +LY  D
Sbjct: 735 KGKSGDIDFDGPDFKSPKLKGEIDTPDINVKGDLYTPD 772


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,061,406
Number of Sequences: 59808
Number of extensions: 369881
Number of successful extensions: 1470
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1447
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)