Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L11
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36980.1 68417.m05240 expressed protein                             31   0.64 
At4g19590.1 68417.m02879 DNAJ heat shock N-terminal domain-conta...    31   0.64 
At1g45090.1 68414.m05169 Ulp1 protease family protein similar to...    31   0.64 
At1g61080.1 68414.m06877 proline-rich family protein                   31   0.85 
At1g76810.1 68414.m08938 eukaryotic translation initiation facto...    30   1.5  
At2g22795.1 68415.m02704 expressed protein                             29   2.6  
At1g56660.1 68414.m06516 expressed protein                             29   2.6  
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ...    28   4.5  
At5g01950.1 68418.m00114 leucine-rich repeat transmembrane prote...    27   7.9  
At4g07380.1 68417.m01133 hypothetical protein                          27   7.9  
At2g24300.2 68415.m02904 calmodulin-binding protein similar to c...    27   7.9  
At2g24300.1 68415.m02905 calmodulin-binding protein similar to c...    27   7.9  
At2g18915.2 68415.m02208 F-box family protein / LOV kelch protei...    27   7.9  
At2g18915.1 68415.m02207 F-box family protein / LOV kelch protei...    27   7.9  

>At4g36980.1 68417.m05240 expressed protein
          Length = 560

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 4/83 (4%)
 Frame = +2

Query: 86  VEKQDAAPEEVTSTEVKESPIKKSPTKKTEVPES-NGKENGTXXXXXXXXXXXXNGDAEE 262
           +E + AAP   T T+  + P  K    +     + NGK+N              + D EE
Sbjct: 142 LEAKLAAPFLGTRTQPAQPPANKGTYSQVGFSYAGNGKDNSLDADEDDVDDDEDDEDEEE 201

Query: 263 ---SNDATENGDVTEVKETGVKR 322
              SND+ + G  T  K+ G+KR
Sbjct: 202 EFDSNDSDDEGMETIAKQFGIKR 224


>At4g19590.1 68417.m02879 DNAJ heat shock N-terminal
           domain-containing protein protein YJL162c, Saccharomyces
           cerevisiae, PIR2:S56945; contains Pfam PF00226: DnaJ
           domain;
          Length = 345

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +2

Query: 110 EEVTSTEVKESPIKK--SPTKKTEVPESNGKE-NGTXXXXXXXXXXXXNGDAEESNDAT 277
           E V +TE++++P +K  +PT+K E P++  K  NG             N D+    D++
Sbjct: 223 EYVRATEIEKTPTEKEKTPTEKEETPQATNKNTNGASSSCDRDSSLNVNFDSSFRRDSS 281


>At1g45090.1 68414.m05169 Ulp1 protease family protein similar to
           At5g28270, At2g12100, At2g05450, At2g16180, At2g06750;
           contains Pfam profile PF02902: Ulp1 protease family,
           C-terminal catalytic domain
          Length = 1210

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 13/39 (33%), Positives = 26/39 (66%)
 Frame = +2

Query: 86  VEKQDAAPEEVTSTEVKESPIKKSPTKKTEVPESNGKEN 202
           + ++ A PEEV  T++K+  +++  ++K  +PE  GKE+
Sbjct: 841 IPEKVAVPEEVL-TQLKDDVLEEKVSEKVAIPEETGKED 878


>At1g61080.1 68414.m06877 proline-rich family protein 
          Length = 907

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 422 SLLPLQLVGFPPPLSPSFRELSSLSPPP 339
           +++PL+    PPP  P+F+ L   +PPP
Sbjct: 483 AVMPLKHFAPPPPTPPAFKPLKGSAPPP 510


>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
           family protein / eIF-2 family protein similar to IF2
           protein [Drosophila melanogaster] GI:7108770; contains
           Pfam profile PF03144: Elongation factor Tu domain 2
          Length = 1294

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 21/82 (25%), Positives = 31/82 (37%)
 Frame = +2

Query: 83  AVEKQDAAPEEVTSTEVKESPIKKSPTKKTEVPESNGKENGTXXXXXXXXXXXXNGDAEE 262
           A+   D   EEV   E +ESPI  S  KK     S    N                ++ +
Sbjct: 167 ALGSDDDDTEEVHEDEEEESPITFSGKKKKSSKSSKKNTNSFTADLLDEEEGTDASNSRD 226

Query: 263 SNDATENGDVTEVKETGVKRKS 328
             +  E+ +  EV  +G K+ S
Sbjct: 227 DENTIEDEESPEVTFSGKKKSS 248


>At2g22795.1 68415.m02704 expressed protein
          Length = 734

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/71 (21%), Positives = 28/71 (39%)
 Frame = +2

Query: 86  VEKQDAAPEEVTSTEVKESPIKKSPTKKTEVPESNGKENGTXXXXXXXXXXXXNGDAEES 265
           +EK+++AP+E T  +  E   K+    + E  E   +                N ++E+ 
Sbjct: 585 IEKEESAPQEETKEKENEKIEKEESASQEETKEKETETKEKEESSSNESQENVNTESEKK 644

Query: 266 NDATENGDVTE 298
               EN   T+
Sbjct: 645 EQVEENEKKTD 655


>At1g56660.1 68414.m06516 expressed protein
          Length = 522

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 19/79 (24%), Positives = 29/79 (36%)
 Frame = +2

Query: 89  EKQDAAPEEVTSTEVKESPIKKSPTKKTEVPESNGKENGTXXXXXXXXXXXXNGDAEESN 268
           EK ++ PEE      KE   +    +K E+ E +GK+N                  +E  
Sbjct: 140 EKDESGPEEKNKKADKEKKHEDVSQEKEELEEEDGKKNKKKEKDESGTEEKKKKPKKEKK 199

Query: 269 DATENGDVTEVKETGVKRK 325
              E+    + K  G K K
Sbjct: 200 QKEESKSNEDKKVKGKKEK 218


>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp33, putative similar to
           SP|P19684 33 kDa ribonucleoprotein, chloroplast
           precursor {Nicotiana sylvestris}; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 308

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/22 (50%), Positives = 17/22 (77%)
 Frame = +2

Query: 245 NGDAEESNDATENGDVTEVKET 310
           +GD+ E+N+A+E+GD  E K T
Sbjct: 280 DGDSVEANNASEDGDTVEDKNT 301


>At5g01950.1 68418.m00114 leucine-rich repeat transmembrane protein
           kinase, putative receptor protein kinases
          Length = 1032

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/17 (76%), Positives = 13/17 (76%)
 Frame = -1

Query: 464 TEPSEVVRLRSFKRSLL 414
           T PSEV  LRS KRSLL
Sbjct: 109 THPSEVTALRSVKRSLL 125


>At4g07380.1 68417.m01133 hypothetical protein 
          Length = 168

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 110 EEVTSTEVKESPIKKSPTKKTEVPESNGKENGT 208
           EEV+  EV  +   K   K  E  ++NG++NGT
Sbjct: 92  EEVSQEEVMVNEETKEVDKMEEETQTNGEDNGT 124


>At2g24300.2 68415.m02904 calmodulin-binding protein similar to
           calmodulin-binding protein TCB60 GI:1698548 from
           [Nicotiana tabacum]
          Length = 599

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +3

Query: 84  QLKSKTPHPKR*LPRKSRNLQLR---NLPP 164
           +L S++P PKR   R  RNLQL     +PP
Sbjct: 70  KLTSRSPEPKRIQDRNGRNLQLHFRTRMPP 99


>At2g24300.1 68415.m02905 calmodulin-binding protein similar to
           calmodulin-binding protein TCB60 GI:1698548 from
           [Nicotiana tabacum]
          Length = 552

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = +3

Query: 84  QLKSKTPHPKR*LPRKSRNLQLR---NLPP 164
           +L S++P PKR   R  RNLQL     +PP
Sbjct: 23  KLTSRSPEPKRIQDRNGRNLQLHFRTRMPP 52


>At2g18915.2 68415.m02208 F-box family protein / LOV kelch protein 2
           (LKP2) / adagio 2 (ADO2) E3 ubiquitin ligase SCF complex
           F-box subunit; identical to Adagio 2 GI:13487070 from
           [Arabidopsis thaliana]; contains Pfam profiles PF01344:
           Kelch motif and PF00646: F-box domain; identical to cDNA
           LOV kelch protein 2 GI:18146957; identical to cDNA
           Adagio 2 (ADO2) GI:13487069
          Length = 611

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 377 PSFRELSSLSPPPQRQW 327
           PS+RE+S L+PP  R W
Sbjct: 384 PSWREVSGLAPPIPRSW 400


>At2g18915.1 68415.m02207 F-box family protein / LOV kelch protein 2
           (LKP2) / adagio 2 (ADO2) E3 ubiquitin ligase SCF complex
           F-box subunit; identical to Adagio 2 GI:13487070 from
           [Arabidopsis thaliana]; contains Pfam profiles PF01344:
           Kelch motif and PF00646: F-box domain; identical to cDNA
           LOV kelch protein 2 GI:18146957; identical to cDNA
           Adagio 2 (ADO2) GI:13487069
          Length = 601

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 377 PSFRELSSLSPPPQRQW 327
           PS+RE+S L+PP  R W
Sbjct: 374 PSWREVSGLAPPIPRSW 390


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,270,501
Number of Sequences: 28952
Number of extensions: 219693
Number of successful extensions: 884
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)