Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L08
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36903| Best HMM Match : p450 (HMM E-Value=0)                        67   1e-11
SB_32285| Best HMM Match : Metallophos (HMM E-Value=2.4e-07)           42   3e-04
SB_30321| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.004
SB_2829| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.067
SB_47790| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.089
SB_9861| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.27 
SB_58969| Best HMM Match : Avidin (HMM E-Value=3.7)                    29   3.3  
SB_7758| Best HMM Match : F5_F8_type_C (HMM E-Value=7.8e-26)           29   3.3  
SB_43823| Best HMM Match : MAM (HMM E-Value=0)                         29   4.4  
SB_56964| Best HMM Match : Zona_pellucida (HMM E-Value=0)              28   5.8  
SB_20056| Best HMM Match : zf-C3HC4 (HMM E-Value=9e-11)                28   7.7  
SB_23681| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_8597| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.7  

>SB_36903| Best HMM Match : p450 (HMM E-Value=0)
          Length = 644

 Score = 66.9 bits (156), Expect = 1e-11
 Identities = 27/87 (31%), Positives = 44/87 (50%)
 Frame = +1

Query: 1   EINKMIYQFCVSLKIQSARVCEGITRLFGSEVVYVLKRITIGPDEICSFVIGDACGDVYN 180
           ++   +   C+ LK++  RVC+ + + F  EV+ V     +  +E+C  + G  C   +N
Sbjct: 486 DVAGFVTNLCLKLKVEDTRVCKLVIQEFKGEVLTVFDEFFLSSNEVCGTLFGSTCAKTFN 545

Query: 181 PYHEWEVAFPPVPKPAVRPLDAPIDKA 261
           P   W V FP  PKP V P+  P  K+
Sbjct: 546 PDIFWNVTFPKTPKPPVVPIPQPKSKS 572


>SB_32285| Best HMM Match : Metallophos (HMM E-Value=2.4e-07)
          Length = 562

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 8/136 (5%)
 Frame = +1

Query: 271 KVLQISDTHFDPYYAEGANADCNEPLCCRASSGPLRTPDSGAGRWGDYRKCDTPKRTIDH 450
           K L  SD H+D +Y E  + +    LC +  +      ++  GR G    CD+P   +  
Sbjct: 122 KFLVASDLHYDTFYDESVSEE--NTLCRKLGNYTSAKFNATLGRVG----CDSPMSLMTS 175

Query: 451 MLKHIADTH--TDIDYILWTGDLPPHDV------WNQTKEEHLQVFKKRLLKCLICFREY 606
            LKH+  TH     D++L TGD   H            ++  L   K   L+    F + 
Sbjct: 176 WLKHMKSTHEKNPADFLLITGDFNAHRTDESYFPHGSGRQRLLSSIKSITLEIHNAFPDL 235

Query: 607 QFSQLSGNHESSPVNS 654
               L GN++  P N+
Sbjct: 236 PVFPLFGNNDFQPHNT 251


>SB_30321| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 599

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
 Frame = +1

Query: 265 TFKVLQISDTHFDPYYAEGANADCNEPLCCRASSGPLRTPDSGA--GRWGDYRKCDTPKR 438
           + K L +SD H D YY        ++P  CR   G   T +  A  GR G    CD+P+ 
Sbjct: 82  SIKFLMVSDLHLDSYYDASV---ASKPTFCR-GVGNYSTANYKAPYGRVG----CDSPEI 133

Query: 439 TIDHMLKHIADTHTD--IDYILWTGDLPPH 522
            ID ++K +   + +   D+++ TGD+  H
Sbjct: 134 LIDSLVKGMRSVYDEKGADFMIITGDMSSH 163


>SB_2829| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 34.7 bits (76), Expect = 0.067
 Identities = 22/65 (33%), Positives = 32/65 (49%)
 Frame = -3

Query: 234 SNSWFWYWRKCDLPLVIWIIYVAASVADHETAYLIWSYSYTFQYVHYFTPEQSRDSFADT 55
           S+ WF + +     L  W+ +V+ SV      +LI  YS  + Y H+F     RDSF+D 
Sbjct: 551 SHDWFGFMKPFGTHL--WVAFVSTSVVLVIMVWLIDMYS-PYGYKHHFQVFTLRDSFSDL 607

Query: 54  SGLNF 40
           S   F
Sbjct: 608 SSTVF 612


>SB_47790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 34.3 bits (75), Expect = 0.089
 Identities = 19/52 (36%), Positives = 27/52 (51%)
 Frame = -3

Query: 201 DLPLVIWIIYVAASVADHETAYLIWSYSYTFQYVHYFTPEQSRDSFADTSGL 46
           DL  V W+ +VA      ET Y+ W   YT +Y    T EQ + S+ D +G+
Sbjct: 55  DLGRVTWVTHVATQGIPKETGYMQWVIEYTVEY--SLTGEQWQ-SYQDVNGV 103


>SB_9861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 377

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +1

Query: 256 KAPTFKVLQISDTHFDPYYAEGANADCNEPLCCRASSGPLRTPDSGA 396
           K P  K   ++ +HF P++  G   +C  P+ C  SS P R  D+ A
Sbjct: 28  KVPVQKT-GVNHSHFWPFFYAGGKGEC--PVTCELSSDPKRAKDASA 71


>SB_58969| Best HMM Match : Avidin (HMM E-Value=3.7)
          Length = 706

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 361 KLYSKVVRCSRHSHLQHNMDRNVYRKFVK 275
           ++Y++ V  SRH HLQH  D    R + +
Sbjct: 69  RIYTQHVNDSRHEHLQHVSDSQTVRNYTQ 97


>SB_7758| Best HMM Match : F5_F8_type_C (HMM E-Value=7.8e-26)
          Length = 423

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -3

Query: 201 DLPLVIWIIYVAASVADHETAYLIWSYSYTFQY 103
           DL    W+ +VA      ET Y+ W   YT +Y
Sbjct: 55  DLGRFTWVTHVATQGRPKETGYMQWVTVYTVEY 87


>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
          Length = 1724

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 307  YYAEGANADCNEPLCCRASSGPLRTPDSG 393
            Y  +  + DC+EPLCC  + G     DSG
Sbjct: 1056 YGCDQYHKDCSEPLCCGLTCGGSDICDSG 1084


>SB_56964| Best HMM Match : Zona_pellucida (HMM E-Value=0)
          Length = 908

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = +1

Query: 184 YHEWEVAFPPVPKPAVRPLDAPIDKAPTFKVLQISDTHFDPYYAEGANADCNEPLCCRAS 363
           Y + E    P+ +P +RPL  P+ +  +  +++    H     +E      ++PL  R  
Sbjct: 643 YEQSESLMRPLSEPLIRPLSKPLVRPLSEPLMRPLSEHLIRPLSEPLMRPFSKPL-VRPF 701

Query: 364 SGPLRTPDSG 393
           S PL  P SG
Sbjct: 702 SEPLMRPLSG 711


>SB_20056| Best HMM Match : zf-C3HC4 (HMM E-Value=9e-11)
          Length = 471

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/79 (24%), Positives = 34/79 (43%)
 Frame = +1

Query: 178 NPYHEWEVAFPPVPKPAVRPLDAPIDKAPTFKVLQISDTHFDPYYAEGANADCNEPLCCR 357
           N Y E  V F      + +   +P   +P  ++ +++ T   P    GA  DCN+     
Sbjct: 253 NEYEEMAVDFTRESYSSEKSCLSP--SSPEQEMSELNGTQ-SPKVDNGATKDCNDLFSEN 309

Query: 358 ASSGPLRTPDSGAGRWGDY 414
             +G +R+P S   +  D+
Sbjct: 310 LENGDIRSPASNTEQLDDF 328


>SB_23681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 634

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +1

Query: 145 FVIGDACGDVYNPYHEWEVAFPPVPKPAVRPLDAPIDKAPT-FKVLQISDTHFDPYYAEG 321
           F++     D   P    +V F P+P  A+RP      KA T F++L I  T+F  Y A  
Sbjct: 564 FLVFCTASDSLAPDKTIQVRFEPMPSAAIRP------KAQTCFRIL-ILPTNFCGYAAFQ 616

Query: 322 ANAD 333
           AN D
Sbjct: 617 ANMD 620


>SB_8597| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 632

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = +1

Query: 421 CDTPKRTIDHMLKHIADTHTDIDYILWTGDLPPHDVWNQTKEEHLQVFKKRLLKCL 588
           C     T+ H  +H+      +  ++ +G  P HDV +   +  LQV   RLL+ L
Sbjct: 114 CKLNTETLQHFKRHVPTLVKTLKNLIMSGYSPEHDV-SGISDPFLQVQIIRLLRIL 168


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,318,998
Number of Sequences: 59808
Number of extensions: 522758
Number of successful extensions: 1539
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1530
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)