Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L08
         (656 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g06650.1 68418.m00751 zinc finger (C2H2 type) family protein ...    31   0.67 
At1g61420.1 68414.m06921 S-locus lectin protein kinase family pr...    30   1.2  
At3g60580.1 68416.m06777 zinc finger (C2H2 type) family protein ...    29   2.1  
At4g30590.1 68417.m04340 plastocyanin-like domain-containing pro...    28   6.3  
At2g45120.1 68415.m05615 zinc finger (C2H2 type) family protein ...    28   6.3  
At1g55390.1 68414.m06335 DC1 domain-containing protein similar t...    28   6.3  
At5g48890.1 68418.m06048 hypothetical protein                          27   8.3  
At1g22970.1 68414.m02870 expressed protein                             27   8.3  

>At5g06650.1 68418.m00751 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 191

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 523 DVWNQTKEEHLQVFKKRLLKCLICFREYQFSQLSGNHESS 642
           D +N+  E      K++  KC  CFR +  SQ  G H+++
Sbjct: 37  DNYNENNESIKDDNKEKRFKCHYCFRNFPTSQALGGHQNA 76


>At1g61420.1 68414.m06921 S-locus lectin protein kinase family
           protein contains Pfam domains, PF00954: S-locus
           glycoprotein family, PF00069: Protein kinase domain, and
           PF01453: Lectin (probable mannose binding)
          Length = 807

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 448 HMLKHIADTHTDIDYILWTGDLPPHDV 528
           + +KH AD  TD   + W  DL P DV
Sbjct: 450 YRVKHNADITTDASQVSWRNDLKPQDV 476


>At3g60580.1 68416.m06777 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 288

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 532 NQTKEEHLQVFKKRLLKCLICFREYQFSQLSGNHESS 642
           ++T+ +++ V  KR+ +C IC R +   Q  G H+ S
Sbjct: 209 SETEYDNVVVVAKRIHECPICLRVFASGQALGGHKRS 245


>At4g30590.1 68417.m04340 plastocyanin-like domain-containing
           protein
          Length = 190

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/52 (26%), Positives = 27/52 (51%)
 Frame = +1

Query: 397 GRWGDYRKCDTPKRTIDHMLKHIADTHTDIDYILWTGDLPPHDVWNQTKEEH 552
           G  G ++  D+P  T++H  ++  +     D+I+W  D+    V   TKE++
Sbjct: 32  GSVGSWKVPDSPNNTLNHWAEN--NRFKVGDFIVWKYDMKVDSVLQVTKEDY 81


>At2g45120.1 68415.m05615 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 314

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +1

Query: 535 QTKEEH-LQVFKKRLLKCLICFREYQFSQLSGNHESS 642
           Q + E+ L V +K++ +C ICFR +   Q  G H+ S
Sbjct: 228 QVETEYVLGVKEKKVHECPICFRVFTSGQALGGHKRS 264


>At1g55390.1 68414.m06335 DC1 domain-containing protein similar to
           hypothetical protein GI:4204272 from [Arabidopsis
           thaliana] contains weak PHD zinc finger motifs contains
           weak PHD zinc finger motifs DC1 domain, a divergent
           protein kinase C domain of unknown function.
          Length = 684

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
 Frame = +1

Query: 139 CSFVIGDACGD----VYNPYHEWEVAFPPVP 219
           C FV+ +AC      +YNP H+  +   P P
Sbjct: 426 CDFVLDEACASLPRKIYNPLHKHPLTLQPFP 456


>At5g48890.1 68418.m06048 hypothetical protein
          Length = 173

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = +1

Query: 508 DLPPHDVWNQTKEEHLQVFKKRLLKCLICFREYQFSQLSGNHESS 642
           ++ P    N+T E    +   R+  CL C R++  SQ  G H+++
Sbjct: 15  EIKPSKEANKTDENTSSL---RIFPCLFCSRKFHSSQALGGHQNA 56


>At1g22970.1 68414.m02870 expressed protein
          Length = 357

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = +1

Query: 451 MLKHIADTHTDIDYILWTGDLPPHDVWNQTKEEHLQVFKKRLLKC 585
           M  H++   T +  +LWTG+ P  D   +T E +    +  LL C
Sbjct: 46  MSDHLSKQATIVG-MLWTGESPKADSLKETMESYFNALQGFLLCC 89


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,326,559
Number of Sequences: 28952
Number of extensions: 348730
Number of successful extensions: 995
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)