Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L07
         (649 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)             32   0.46 
SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.46 
SB_31302| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_55109| Best HMM Match : fn3 (HMM E-Value=0.017)                     28   7.5  
SB_40918| Best HMM Match : DMAP_binding (HMM E-Value=0.48)             28   7.5  
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)                   28   7.5  
SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)                 27   9.9  
SB_2333| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.9  

>SB_42955| Best HMM Match : Oxidored_q1_N (HMM E-Value=4.4)
          Length = 435

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +3

Query: 447 APLDRFVVHSMQVSSASEHI--LLVYPRHKGLLGSIGYRYVAF*PVFYYYKMITQSSYK 617
           +PL  +++H   +S  + H   LL YP H   L  I YR + F P+F Y   +   SY+
Sbjct: 68  SPLFTYLIHLYPISYRTIHFSPLLTYPVH---LYPISYRTIHFSPLFTYLIRLYPISYR 123


>SB_51113| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 871

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 30/96 (31%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
 Frame = -1

Query: 448 ALPTIRIPPLSTKYVSIICSALGGTLYHVHG*HTAKDTPPQNIATTTTIGKDYTPISNGA 269
           A P I  PP S   +  + +  G   Y  H  HT   TPPQ   + T  G    P+S   
Sbjct: 502 APPNIPGPPQSLLNMPPVATPPGNQFYDQHFRHTL-GTPPQQTQSLTN-GTPTLPVSKP- 558

Query: 268 G*SVALTSPELYCWASRGRTTVPLVQ-EHYARATGV 164
              VA+T+   Y  + +G TT   +Q   Y ++ GV
Sbjct: 559 --QVAITAYNHYGRSDQGATTALQMQATPYHQSLGV 592


>SB_31302| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 105

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
 Frame = -2

Query: 540 PAALCVLGT-PKVYA-LRQKTPACCVQRSGPGALCPPSESHHSALNMYRLSVVH*VELYI 367
           P AL   G+ P+ Y+ LR  T        G  A+   S S HS     +  + +  E  +
Sbjct: 6   PLALPYYGSIPRSYSSLRPHTQTVSCINVGTNAVGNQSISRHSPTMQGQADLTNTPEASV 65

Query: 366 MFTGSILLRTPHRKTSQPPLRLERITL 286
            F+   LLRT HR     P R   + +
Sbjct: 66  FFSRRDLLRTLHRSHYVTPSRSRHLEM 92


>SB_55109| Best HMM Match : fn3 (HMM E-Value=0.017)
          Length = 339

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/53 (26%), Positives = 29/53 (54%)
 Frame = -1

Query: 517 YTKSICSEAEDTCMLCTTKRSRGALPTIRIPPLSTKYVSIICSALGGTLYHVH 359
           + +++    ED  +   TKR +GA+  +RIP  + +  S++ + L  ++ H H
Sbjct: 83  FARNVVGYGEDGTITIRTKR-QGAM--VRIPAFNQQLTSLLSNILAESVSHTH 132


>SB_40918| Best HMM Match : DMAP_binding (HMM E-Value=0.48)
          Length = 366

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 216 PREAQQYSSGDVSATDYPAP 275
           PR  + Y    VS TDYP P
Sbjct: 163 PRHGETYRQASVSGTDYPTP 182


>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 1024

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 328 QNIATTTTIGKDYTPISNGAG*SVALTSP 242
           +N++  +TI  D T I  GAG +V++T P
Sbjct: 207 ENVSEESTIVDDSTQIEQGAGNNVSVTQP 235


>SB_44780| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-34)
          Length = 747

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 84  LKLYFFLINCISYDYHSVY 140
           L LY F++ C+S D H +Y
Sbjct: 336 LGLYLFILTCVSMDTHGLY 354


>SB_2333| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 415 TKYVSIICSALGGTLYHVHG*HTAKDTPPQNIATTTTI 302
           +K+V+ I      ++  VH  H+ + TP  N +T+T +
Sbjct: 318 SKFVNSINKRRSSSMDEVHSVHSGRGTPDSNTSTSTAL 355


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,644,560
Number of Sequences: 59808
Number of extensions: 566254
Number of successful extensions: 1206
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)