Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0002_L06
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56549| Best HMM Match : Spermine_synth (HMM E-Value=1.5e-29)       168   3e-42
SB_55793| Best HMM Match : Spermine_synth (HMM E-Value=1.6e-15)       122   2e-28
SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)            36   0.025
SB_24987| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.71 
SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04)                 31   0.93 
SB_24501| Best HMM Match : RVT_1 (HMM E-Value=4.2e-37)                 29   2.2  
SB_44464| Best HMM Match : Adaptin_N (HMM E-Value=0)                   29   3.8  
SB_23686| Best HMM Match : NHL (HMM E-Value=2.7e-07)                   28   5.0  
SB_39909| Best HMM Match : NHL (HMM E-Value=7.4e-05)                   28   6.6  
SB_35462| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_5704| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.6  

>SB_56549| Best HMM Match : Spermine_synth (HMM E-Value=1.5e-29)
          Length = 294

 Score =  168 bits (408), Expect = 3e-42
 Identities = 75/112 (66%), Positives = 89/112 (79%)
 Frame = +2

Query: 215 SYGRVLVLDGIIQCTQKDEFSYQEMISFLPLCCHKNPERVLIVGGGDGGVAREVAKHPKV 394
           S+G VLVLDG+IQCT +DEFSYQEMIS LPL  H NP++VL++GGGDGGV RE +KHP V
Sbjct: 157 SFGTVLVLDGVIQCTDRDEFSYQEMISMLPLNSHPNPKKVLVIGGGDGGVIREASKHPSV 216

Query: 395 KKIVQVEIDAKVIEVSKKYLPFLAVGFESEKLELHVGDGFESLKEHSQEFDV 550
           + IVQ EID  VI +SKKYLP +AVG+ S KL  H+GDGFE +K H  EFDV
Sbjct: 217 ESIVQCEIDEDVINISKKYLPNMAVGYTSPKLTQHIGDGFEYMKNHENEFDV 268


>SB_55793| Best HMM Match : Spermine_synth (HMM E-Value=1.6e-15)
          Length = 317

 Score =  122 bits (294), Expect = 2e-28
 Identities = 56/123 (45%), Positives = 83/123 (67%), Gaps = 1/123 (0%)
 Frame = +2

Query: 143 TFEVNEVLHSEQSEYQYIQVFDTTSYGRVLVLDGIIQCTQKDEFSYQEMISFLPLCCHKN 322
           +FE+ EVL  +Q++  ++ +F    +G V+ LDGIIQ T++DEF Y EM++  PL  H  
Sbjct: 194 SFEIGEVLFEQQTDSWHLIIFRNEEFGTVMALDGIIQTTERDEFIYHEMLTHTPLFAHGA 253

Query: 323 PERVLIVGGGDGGVAREVAKHPKVKKIVQVEIDAKVIEVSKKYLPFLAVG-FESEKLELH 499
            +RVLI+GGGDGG+ REV KHP+V+ + QVEID  VI++ K YLP  + G F+  +  + 
Sbjct: 254 AKRVLIIGGGDGGILREVLKHPEVEHVTQVEIDQSVIDMCKTYLPNHSNGAFDDPRANIV 313

Query: 500 VGD 508
           + D
Sbjct: 314 IAD 316


>SB_57621| Best HMM Match : Spermine_synth (HMM E-Value=0.1)
          Length = 627

 Score = 35.9 bits (79), Expect = 0.025
 Identities = 22/68 (32%), Positives = 37/68 (54%)
 Frame = +2

Query: 326 ERVLIVGGGDGGVAREVAKHPKVKKIVQVEIDAKVIEVSKKYLPFLAVGFESEKLELHVG 505
           ++ LIVG G GG+A  + +      I  VE+D  V+ V+K     +    E ++L +HV 
Sbjct: 423 KQALIVGLGGGGLAMFIYQFFSQVAIDAVELDEAVVSVAKTQFGCI----EDKRLAIHVK 478

Query: 506 DGFESLKE 529
           DG + ++E
Sbjct: 479 DGLKFIEE 486


>SB_24987| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 31.1 bits (67), Expect = 0.71
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +2

Query: 407 QVEIDAKVIEVSKKYLPFLAVGFESEKLELHVGDGFESLKEHSQEFDVDHHR 562
           Q EI  KV+  +K   P+   G E+E+ E+H G   +++ E   +  ++H R
Sbjct: 287 QKEIQ-KVLGKNKYNTPYRYPGRETERKEMHAGQTMKNISEEQYQEKLNHQR 337


>SB_17447| Best HMM Match : zf-B_box (HMM E-Value=0.04)
          Length = 1223

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 21/62 (33%), Positives = 31/62 (50%)
 Frame = +2

Query: 386 PKVKKIVQVEIDAKVIEVSKKYLPFLAVGFESEKLELHVGDGFESLKEHSQEFDVDHHRQ 565
           PK +K   V+   KV +  K+Y PF     ES K++  +  G   LKE  ++    H R+
Sbjct: 152 PKFRKKA-VKKKKKVPKTKKEYTPFPPPQPES-KMDKELASGEYFLKEKERKAQAQHERK 209

Query: 566 QR 571
           QR
Sbjct: 210 QR 211


>SB_24501| Best HMM Match : RVT_1 (HMM E-Value=4.2e-37)
          Length = 565

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = -2

Query: 177 CSECSTSFTSNVNVPPGHISHVSVNQL 97
           C EC  +F + + +PP H  H +++ +
Sbjct: 516 CPECGRAFHARIGLPPTHTQHTNLDDI 542


>SB_44464| Best HMM Match : Adaptin_N (HMM E-Value=0)
          Length = 596

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
 Frame = +2

Query: 206 DTTSYGRVLVLDGIIQCTQKDEFSYQEMIS-FLPLCCHKNPERVL 337
           + T +G++ +LD + Q T KDE   Q +     P   H N   VL
Sbjct: 132 ECTEWGQIFILDSLAQYTPKDEREAQSICERVTPRLSHANAAVVL 176


>SB_23686| Best HMM Match : NHL (HMM E-Value=2.7e-07)
          Length = 1055

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 278 YQEMISFLPLCCHKNPERVLIVGGGDG-GVAREVAKHPKVKKIVQVEIDAKVIEV 439
           +Q  +  L + C   P  V ++ GG+G G A    K  K++    ++ID KVI V
Sbjct: 611 HQHAVYMLDMHC---PVNVTLIAGGNGPGHANGQGKGVKMRDPADLDIDGKVIYV 662


>SB_39909| Best HMM Match : NHL (HMM E-Value=7.4e-05)
          Length = 406

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 278 YQEMISFLPLCCHKNPERVLIVGGGDG-GVAREVAKHPKVKKIVQVEIDAKVIEV 439
           +Q  +  L + C   P  V ++ GG+G G A    K  K++    ++ID K+I V
Sbjct: 305 HQHAVYMLDMHC---PVNVTLIAGGNGPGHANGQGKGVKMRDPADLDIDGKIIYV 356


>SB_35462| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/67 (25%), Positives = 30/67 (44%)
 Frame = +2

Query: 227 VLVLDGIIQCTQKDEFSYQEMISFLPLCCHKNPERVLIVGGGDGGVAREVAKHPKVKKIV 406
           V  ++GI+       FS Q+  S L +       ++L +G GDG V   +A H K   + 
Sbjct: 88  VTTINGILNRGSMHIFSAQQFRSLLGVDDKWKANKLLDLGAGDGKVTEVMAPHFKEVYVT 147

Query: 407 QVEIDAK 427
           +  +  +
Sbjct: 148 EQSVSMR 154


>SB_5704| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2061

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +2

Query: 278  YQEMISFLPLCCHKNPERVLIVGGGDG-GVAREVAKHPKVKKIVQVEIDAKVIEV 439
            +Q  +  L + C   P  V ++ GG+G G A    K  K++    ++ID K+I V
Sbjct: 860  HQHAVYMLDMHC---PVNVTLIAGGNGPGHANGQGKGVKMRDPADLDIDGKIIYV 911


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,673,109
Number of Sequences: 59808
Number of extensions: 373218
Number of successful extensions: 1090
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1089
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)